View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19992_high_11 (Length: 242)
Name: NF19992_high_11
Description: NF19992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19992_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 50531679 - 50531905
Alignment:
| Q |
1 |
agagcaaaaaggagataaaacaatttatttcttnnnnnnnnnnnn-cttactacgcgtgaaatcccgaatggatgcaaaaaagattgtatatagtacaga |
99 |
Q |
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| T |
50531679 |
agagcaaaaaggagataaaacaatttatttcttaaaaaaagaaaaacttactacgcgtgaaatcccgaatggatgcaaaaaagattgtatatagtacaga |
50531778 |
T |
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| Q |
100 |
aatgcatatgatcataaagttaaaggtataagaaaacgacaaaaaatacggaagagtatattaatgatatgtaacgtcatgaaaaggatggctaggagga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50531779 |
aatgcatatgatcataaagttaaaggtataagaaaacgacaaaaaatacggaagagtatattaatgatatgtaacgtcatgaaaaggatggctaggagga |
50531878 |
T |
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| Q |
200 |
gaagagaagagaagaggatattgaatg |
226 |
Q |
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||||||||||||||||||||||||||| |
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| T |
50531879 |
gaagagaagagaagaggatattgaatg |
50531905 |
T |
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