View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19992_high_13 (Length: 227)
Name: NF19992_high_13
Description: NF19992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19992_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 41746782 - 41746979
Alignment:
| Q |
15 |
aatatcaaatcaactgattaatttatttactttataacagtattttattcgagtgaagtgttaacaacatggttcaacacatattttataactcaatctt |
114 |
Q |
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| T |
41746782 |
aatatcaaatcaactgattaatttatttactttataacagtattttattcgagtgaagtgttaacaacacggttcaacacatattttataactcaatctt |
41746881 |
T |
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| Q |
115 |
ttattagttaaaattcatataaatctcatataaatttggtgggactcctatgaattgtaactaataataagaaagaccgtggtaaagagtgtgtttct |
212 |
Q |
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| T |
41746882 |
ttattagttaaaattcatctaaatctcatataaatttggtgggactcttatgaattgtaactaataataaaaaagaccgtggtaaagagtgtgtttct |
41746979 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 33029563 - 33029523
Alignment:
| Q |
139 |
ctcatataaatttggtgggactcctatgaattgtaactaat |
179 |
Q |
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| T |
33029563 |
ctcatataaatttggtgggacttatatgaattttaactaat |
33029523 |
T |
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