View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19992_high_2 (Length: 609)
Name: NF19992_high_2
Description: NF19992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19992_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 14 - 433
Target Start/End: Complemental strand, 14459371 - 14458947
Alignment:
| Q |
14 |
cataggtgaagtacaatttttctactatgcaaaattctacaagtcagagaatcatataaggtggcatgcatataagaaagcaataaaagataatgaaggt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14459371 |
cataggtgaagtacaatttttctactatgcaaaattctacaagtcagagaatcatataaggtggcatgcatataagaaagcaataaaagataatgaaggt |
14459272 |
T |
|
| Q |
114 |
aagggaaaacttatgtcagaaccaacacatcatcaacaaattttgcgtcatttactcaacaatgagtccgaggaatggtgcaataaaatattcgaggtat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14459271 |
aagggaaaacttatgtcagaaccaacacatcatcaacaaattttgcgtcatttactcaacaatgagtccgaggaatggtgcaataaaatattcgaggtaa |
14459172 |
T |
|
| Q |
214 |
ttactgcattgaattattcctaagtttatatatcctatttcatttcatcattacataaaatcataaacagtactaacacatcactcatagatgaatttga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14459171 |
ttactgcattgaattattcctaagtttatatatcctatttcatttcatcattacataaaatcataaacagtactaacacatcactcatagatgaatttga |
14459072 |
T |
|
| Q |
314 |
atcctctcccctgctacaatagtgtgac-ata-ttttcatgtaaaaaagtgttatca---cacatcaatattatgttctggttaaacacaatattgttgc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14459071 |
atcctctcccctgctacaatagtgtgacaatatttttcatgtgaaaaagtgttatcacttcacatcaatattatgttctggttaaacaaaatattgttgc |
14458972 |
T |
|
| Q |
409 |
attgttgcatgcagaggatccaaat |
433 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
14458971 |
atagttgcatgcagaggatccaaat |
14458947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 440 - 591
Target Start/End: Complemental strand, 14467837 - 14467687
Alignment:
| Q |
440 |
ctacagactctactgtcatttctccaacattatagattgaatccactgtgaaatacatattcacatgtgtcaaaattgaacctgttaccaaacgggaaac |
539 |
Q |
| |
|
|||||||||||||| | ||| |||||||||||||||||||||| ||||||||||| |||||||||| |||||| | |||||||||||||||||||||| |
|
|
| T |
14467837 |
ctacagactctacttttattgctccaacattatagattgaatcaactgtgaaata-atattcacatatgtcaagttccaacctgttaccaaacgggaaac |
14467739 |
T |
|
| Q |
540 |
ttgtaccatatagagatcaaaatcttcttttctagtattttggcttagattt |
591 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14467738 |
ttggaccatatagagatcaaaatcttcttttctagtagtttggcttagattt |
14467687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 308 - 410
Target Start/End: Complemental strand, 14468059 - 14467954
Alignment:
| Q |
308 |
atttgaatcctctcccctgctacaatagtgtgaca---tattttcatgtaaaaaagtgttatcacacatcaatattatgttctggttaaacacaatattg |
404 |
Q |
| |
|
|||||||||||||||| || | ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14468059 |
atttgaatcctctcccatggtgcaacagtgtgacaaaatattttcatgtaaaaaagtgttatcacacatcaatattatgttctggttaaacaaaatattg |
14467960 |
T |
|
| Q |
405 |
ttgcat |
410 |
Q |
| |
|
|||||| |
|
|
| T |
14467959 |
ttgcat |
14467954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University