View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19992_high_8 (Length: 339)
Name: NF19992_high_8
Description: NF19992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19992_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 6495183 - 6495489
Alignment:
| Q |
18 |
aatttgagttgtgttttgtgtgggagggataatgaaaggacgaatcatctttttatgcattgtgaggttgcgagaggtgtttggttagaacttcttcatt |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6495183 |
aatttgagttgcgttttgtgtgggagggataatgaaaggacgaatcatctttttatgcattgtgaggttgcgagaggtgtttggttagaacttcttcatt |
6495282 |
T |
|
| Q |
118 |
gggtgggtgttatgttcatcattcctcaaaatttgttcaaccattgggcgtgttggaatgcaggttcgtcgaacaagaggatcattcgagggcttagact |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6495283 |
gggtgggtgttatgttcatcattcctcaaaatttgttcaaccattgggcgtgttggaatgcgggttcgtcgaacaagaggatcattcgagggcttagact |
6495382 |
T |
|
| Q |
218 |
catatggcatgcggctatttgggttatatggaatgctaggaatgataaaattttcaatgctaaggagacgggggtgatggagttggtggatgatattaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6495383 |
catatggcatgcggctatttgggttatatggaatgctaggaatgataaaattttcaatgctaaggagacgggggtgatggagttggtggatgatattaaa |
6495482 |
T |
|
| Q |
318 |
gttttgc |
324 |
Q |
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||||||| |
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| T |
6495483 |
gttttgc |
6495489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 30422097 - 30421792
Alignment:
| Q |
18 |
aatttgagttgtgttttgtgtgggagggataatgaaaggacgaatcatctttttatgcattgtgaggttgcgagaggtgtttggttagaacttcttcatt |
117 |
Q |
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||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30422097 |
aatttgagttgtgttttgtgtggaagggataacgaaagcacgaatcatctttttatgcattgtgaggttgcgagaggtgtttggttagaacttctccatt |
30421998 |
T |
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| Q |
118 |
gggtgggtgttatgttcatcattcctcaaaatttgttcaaccattgggcgtgttggaatgcaggttcgtcgaacaagaggatcattcgagggcttagact |
217 |
Q |
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|||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||| |||||||| |
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| T |
30421997 |
gggtgggttttatgttcatcattcctcaaaacttgttcatccattgggcgtgttggaatgcggtttcgtcgaacaagaagatcattcgaggacttagact |
30421898 |
T |
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| Q |
218 |
catatggcatgcggctatttgggttatatggaatgctaggaatgataaaattttcaatgctaaggagacgggggtgatggagttggtggatgatattaaa |
317 |
Q |
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||| ||||||||| |||||| ||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30421897 |
catttggcatgcgactatttaggtgatatgaaaggcaaggaatgataaaattttcaatgctaaggagacgggggtgatggagttggtggatgatattaaa |
30421798 |
T |
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| Q |
318 |
gttttg |
323 |
Q |
| |
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|||||| |
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| T |
30421797 |
gttttg |
30421792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 51 - 319
Target Start/End: Original strand, 12830521 - 12830789
Alignment:
| Q |
51 |
gaaaggacgaatcatctttttatgcattgtgaggttgcgagaggtgtttggttagaacttcttcattgggtgggtgttatgttcatcattcctcaaaatt |
150 |
Q |
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||||| |||||||||||||| |||||||||| | | ||||||||| ||||||| |||||||||||| |||| || |||||| || || || ||||||| |
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| T |
12830521 |
gaaagaacgaatcatcttttcatgcattgtgtgatggcgagaggtatttggttggaacttcttcatcgggttggaaatatgtttataatcccccaaaatt |
12830620 |
T |
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| Q |
151 |
tgttcaaccattgggcgtgttggaatgcaggttcgtcgaacaagaggatcattcgagggcttagactcatatggcatgcggctatttgggttatatggaa |
250 |
Q |
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||||||||||||||||||||||||| || || ||||||| |||| ||| ||||| || ||| | || ||||||||||| | |||||| | || ||||| |
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| T |
12830621 |
tgttcaaccattgggcgtgttggaacgcggggtcgtcgagtaagaagattattcggggactttgtcttatatggcatgctaccatttggatgatttggaa |
12830720 |
T |
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| Q |
251 |
tgctaggaatgataaaattttcaatgctaaggagacgggggtgatggagttggtggatgatattaaagt |
319 |
Q |
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| T |
12830721 |
agttaggaatggcaagatctttaatgcaaaggaaacagaggtgatggagttggtggacgatattaaagt |
12830789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 316
Target Start/End: Complemental strand, 27714085 - 27714015
Alignment:
| Q |
246 |
tggaatgctaggaatgataaaattttcaatgctaaggagacgggggtgatggagttggtggatgatattaa |
316 |
Q |
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||||| ||||| ||||||||||| |||||||||||||| ||| ||||||||| ||||||||||| ||||| |
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| T |
27714085 |
tggaaagctagaaatgataaaatcttcaatgctaaggattcggaggtgatggaattggtggatgaaattaa |
27714015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 44513727 - 44513576
Alignment:
| Q |
51 |
gaaaggacgaatcatctttttatgcattgtgaggttgcgagaggtgtttggttagaacttcttcattgggtgggtgttatgttcatcattcctcaaaatt |
150 |
Q |
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||||| ||||| |||||||| ||||||| ||| || |||||||| || ||||| || || | | ||||||||| || ||| || || |||||||| | |
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| T |
44513727 |
gaaagaacgaaccatcttttcatgcattatgatgtggcgagaggggtgtggttggagctcttccgatgggtgggtaatacgtttattatccctcaaaact |
44513628 |
T |
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| Q |
151 |
tgttcaaccattgggcgtgttggaatgcaggttcgtcgaacaagaggatcat |
202 |
Q |
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||||||| |||||| ||||||||||| || ||||||||||||| |||||| |
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| T |
44513627 |
tgttcaatcattggttgtgttggaatgtggggtcgtcgaacaagaagatcat |
44513576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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