View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19992_high_9 (Length: 277)
Name: NF19992_high_9
Description: NF19992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19992_high_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 16955200 - 16954941
Alignment:
| Q |
18 |
ctgataacctttcagaaaaaggatttattgaaggcatgaagaaactttcgatgatagaggagcttgaagttttatatcgcatgaaactgtcccagaattc |
117 |
Q |
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| T |
16955200 |
ctgataacctttcagaaaaaggatttattggaggcatgaagaaactttcgatgatagaggagcttgaagttttatatcccatcaaactgtcccagaattc |
16955101 |
T |
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| Q |
118 |
tattgaagttgtaggtggttgttgtcctcttctgaaatcacttgaatgtcagctcactttcgataaggaagagatatctgaggacgattttttggctatc |
217 |
Q |
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| T |
16955100 |
tattgaagctgtaggtggttgttgtcctcttctgaaatcactggaatgtcatctcactttcgataaggaagaaatatctgatgacgagtttttggctgtc |
16955001 |
T |
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| Q |
218 |
gctaaaacaatgcctcgattatgtcatcttaaaatttctcgaaataagctctcatctgat |
277 |
Q |
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| T |
16955000 |
gctaaaacaatgcctcgactacgtcatcttaaaatttctcgaaataagctctcatctgat |
16954941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 16965779 - 16965517
Alignment:
| Q |
18 |
ctgataacctttcagaaaaaggatttattgaaggcatgaagaaactttcgatgatagaggagcttgaagttttatatcgcatgaaactgtcccagaattc |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||| ||||| | | |||||||||| |||||| |
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| T |
16965779 |
ctgatagcctttcagaaaaaggatttattgaaggcataaaaaaactttcgatgatagaggagctcgaaatttcatatcccttcaaactgtcccggaattc |
16965680 |
T |
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| Q |
118 |
tattgaagttgtaggtggttgttgtcctcttctgaaatcacttgaatgtcagctcactttcgataaggaa---gagatatctgaggacgattttttggct |
214 |
Q |
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| T |
16965679 |
cattgaagttgtaggtggatcttgtcctcttctaaaatcactgacatgtatgctcacttccgatatgaaaactggaaaatccgatgatgagctgttcgct |
16965580 |
T |
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| Q |
215 |
atcgctaaaacaatgcctcgattatgtcatcttaaaatttctcgaaataagctctcatctgat |
277 |
Q |
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| T |
16965579 |
atcgctaaatcaatgcctcgattacgtcatcttaaaattgctggaaataatctctcatctgat |
16965517 |
T |
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