View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19992_low_1 (Length: 693)
Name: NF19992_low_1
Description: NF19992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19992_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 553; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 23 - 677
Target Start/End: Complemental strand, 22721929 - 22721294
Alignment:
| Q |
23 |
gttactgggctgttgttttggaatcattcataatgcttgggattatgtttaagtagtatatacactttgcaaagtgtttatgcttgatttatattttccg |
122 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22721929 |
gttactaggctgttgttttggaatcattcataatgcttgggattatgtttaagtagtatatacactttgcaaagtgtttatgcttgatttatattttctg |
22721830 |
T |
|
| Q |
123 |
gtgtagagttcataaactgaagactcaattttcacggtttgacgttgttatcacactcccaagattataggaaattgattcatttactcggtcatatttc |
222 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22721829 |
gtgtagagttcataaactgaagactcaattttcacggtttgacgttgttatcacactcccaagattataggaaattgattcatttactcggccatatttc |
22721730 |
T |
|
| Q |
223 |
aagtgagttttgttacttctgttccgattgattaatgttagttatttatatgacttgaataatgaaagaaaatggatcatggttacgaatatgtgaagat |
322 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22721729 |
aagtgagttttgttacttctgttccgattgattaatgttagttatgtatatgacttgaataatgaaagaaaatggatcatggttacgaatatgtgaagat |
22721630 |
T |
|
| Q |
323 |
ttggaatcgagatttgaaagcctacatttgtgacagttaaggacttggagatggggttgaaaagatggtaagaatagccgattcttctggacgaacaacc |
422 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||| |
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| T |
22721629 |
ttggaatcgagatttgaaagcctacatttgtgacagttaaggacttggagatggggttgaaaagatggtaagaataaccgatttttctggaggaacaacc |
22721530 |
T |
|
| Q |
423 |
tgaatattctaactagcattaatctgttgtttcgatttatagttattgttctcagactaatttcagtatacaaacagcagagattaagcattagttagat |
522 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22721529 |
tgaaaattctaactagcattaatctgttgtttcgatttatagttattgttctcggactaatttcagtatacaaacagcagagattaagcattagttagat |
22721430 |
T |
|
| Q |
523 |
agataacttgctacacaagttagctagttagttataactaactagtctcggtttctattatctacaaacattgtaatatagttatcatgctccttcctat |
622 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22721429 |
agataacttgctacacaagttagctagt-------------------tcggtttctattatctacaaacattgtaatatagttatcatgctccttcctat |
22721349 |
T |
|
| Q |
623 |
gatctatataagttgtaatgctactcttttcaaaattgatgagaaaacatttgat |
677 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22721348 |
gatctatataagttgtaatgctactcttttcacaattgatgagaaaacatttgat |
22721294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 127 - 361
Target Start/End: Original strand, 23747868 - 23748105
Alignment:
| Q |
127 |
agagttcataaactgaagactcaattttcacggtttgacgttgttatcacactcccaagattataggaaattgattcatttactcggtcatatttcaagt |
226 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| ||| | |||||||||| |||||||||| | ||||| ||||||||||||||| |||||||||||||| |
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| T |
23747868 |
agagttcagaaactgaagaatcaattttcacgtttttatgttgttatcatactcccaagacaagaggaagttgattcatttactcagtcatatttcaagt |
23747967 |
T |
|
| Q |
227 |
gagttttgttacttctgttccgattgattaatgttagttat-tta--tatgacttgaataatgaaagaaaatggatcatggttacgaatatgtgaagatt |
323 |
Q |
| |
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||||||||| ||||||||| ||||||||||||||| ||| ||| |||||||||||| ||||||||| |||||||||||||| ||||||||||||||| |
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| T |
23747968 |
aagttttgttgcttctgttctgattgattaatgttaaatatgttatgtatgacttgaatgatgaaagaacatggatcatggttatgaatatgtgaagatt |
23748067 |
T |
|
| Q |
324 |
tggaatcgagatttgaaagcctacatttgtgacagtta |
361 |
Q |
| |
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|| || | |||| | |||||||||||||||||||||| |
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| T |
23748068 |
cgggatggtgattggcaagcctacatttgtgacagtta |
23748105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 127 - 505
Target Start/End: Complemental strand, 2355866 - 2355471
Alignment:
| Q |
127 |
agagttcataaactgaagactcaattttcacggtttgacgttgttatcacactcccaagattataggaaattgattcatttactcggtcatatttcaagt |
226 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||| | |||||||| ||||| || | | ||||||||||||||||||||| |||||||||||||| |
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|
| T |
2355866 |
agagttcagaaactgaagactcaattttctcgtttttatgttgttataacactaccggcaaaagaggaaattgattcatttactcagtcatatttcaagt |
2355767 |
T |
|
| Q |
227 |
gagttttgttacttctg---ttccgattgattaatgttagttattta--tatgacttgaataatgaaagaaaatggatcatg----gttacgaatatgtg |
317 |
Q |
| |
|
||||||||||| ||||| ||| |||||||||||||||| ||| || ||||||||||||||||| |||| ||||||| || |||| ||||||||| |
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| T |
2355766 |
gagttttgttaattctgttcttctgattgattaatgttagctatgtatgtatgacttgaataatgatagaacatggatcctggtttgttatgaatatgtg |
2355667 |
T |
|
| Q |
318 |
aagatttggaatcgagatttgaaagcctacatttgtgacagttaaggacttggagatggg-gttgaaaagatggtaagaatagccgattcttctggacga |
416 |
Q |
| |
|
||||||||| || | |||| | ||||||||||||||| ||||||| ||||| |||||||| ||||||||||| ||| ||||||| ||||| | ||| | |
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| T |
2355666 |
aagatttgggatggtgattggcaagcctacatttgtgccagttaaagactttgagatgggatttgaaaagatgttaaaaatagcccattctaccggaggt |
2355567 |
T |
|
| Q |
417 |
acaacctgaa---tattctaactagcattaatctgttgtttcgat----ttatagttattgttctcagactaatttcagtatacaaacagcagaga |
505 |
Q |
| |
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| |||||||| | ||||||||| | ||||| ||||||| | || |||||| | |||||||| |||||||||||||||||| ||||||||| |
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| T |
2355566 |
agaacctgaaacttcttctaactatctttaatgtgttgttacaatttaattatagatcttgttctccaactaatttcagtatacaagcagcagaga |
2355471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 354
Target Start/End: Original strand, 2222256 - 2222420
Alignment:
| Q |
199 |
gattcatttactcggtcatatttcaagtgagttttgttacttctg---ttccgattgattaatgttagtta--tttatatgacttgaataatgaaagaaa |
293 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||| || ||| ||||| | |||||| || | |||||||||||||||| ||||||| |
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| T |
2222256 |
gattcatttactcagtcatatttcaagtgagtgttgttacttatgttcttctgattggt---tgttagctatgtatatatgacttgaataaagaaagaac |
2222352 |
T |
|
| Q |
294 |
atggatc-------atggttacgaatatgtgaagatttggaatcgagatttgaaagcctacatttgtg |
354 |
Q |
| |
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||||||| || |||| |||||||||||||||||| || | |||| | ||||||||||||||| |
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| T |
2222353 |
atggatcctggtggattgttatgaatatgtgaagatttgggatggtgattggcaagcctacatttgtg |
2222420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 23747782 - 23747840
Alignment:
| Q |
23 |
gttactgggctgttgttttggaatcattcataatgcttgggattatgtttaagtagtat |
81 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||| || ||| ||||||||| ||||||| |
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|
| T |
23747782 |
gttacttggttgttgttttggaatcatttataattctaggggttatgtttatgtagtat |
23747840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 326
Target Start/End: Original strand, 18539157 - 18539286
Alignment:
| Q |
196 |
attgattcatttactcggtcatatttcaagtgagttttgttacttctgttccgattgattaatgttagttatttatatgacttgaataatgaaagaaaat |
295 |
Q |
| |
|
|||||||||| | ||| |||||||||||||||||||| ||||||||||||| |||||||||| |||| || | |||||||| |||| |||||| | |
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|
| T |
18539157 |
attgattcatct-ctcagtcatatttcaagtgagtttagttacttctgttcttattgattaatattagcta--tgtatgacttcaatatcaaaagaacgt |
18539253 |
T |
|
| Q |
296 |
ggatcatgg--ttacgaatatgtgaagatttgg |
326 |
Q |
| |
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||||||| | ||| |||||||||||||||||| |
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|
| T |
18539254 |
ggatcatagttttatgaatatgtgaagatttgg |
18539286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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