View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19992_low_13 (Length: 240)

Name: NF19992_low_13
Description: NF19992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19992_low_13
NF19992_low_13
[»] chr4 (7 HSPs)
chr4 (101-240)||(55927916-55928057)
chr4 (18-83)||(8395931-8395996)
chr4 (18-83)||(8393722-8393787)
chr4 (18-83)||(5136393-5136459)
chr4 (18-83)||(5138618-5138684)
chr4 (18-83)||(7123010-7123075)
chr4 (18-84)||(7125229-7125295)
[»] chr6 (8 HSPs)
chr6 (18-83)||(6027573-6027638)
chr6 (18-84)||(6136078-6136144)
chr6 (18-83)||(33341878-33341944)
chr6 (18-83)||(34167407-34167472)
chr6 (18-83)||(13154242-13154308)
chr6 (18-83)||(13159098-13159164)
chr6 (18-83)||(34165185-34165251)
chr6 (18-83)||(25421633-25421698)
[»] chr5 (8 HSPs)
chr5 (18-83)||(10593585-10593650)
chr5 (18-83)||(25078448-25078513)
chr5 (18-83)||(25136417-25136482)
chr5 (18-83)||(40380418-40380483)
chr5 (18-83)||(40382629-40382694)
chr5 (18-56)||(16544738-16544776)
chr5 (18-56)||(16546960-16546998)
chr5 (29-57)||(22536100-22536128)
[»] chr3 (12 HSPs)
chr3 (18-83)||(25637757-25637822)
chr3 (18-83)||(4598299-4598364)
chr3 (18-83)||(4600520-4600585)
chr3 (18-84)||(10211722-10211789)
chr3 (18-83)||(10056546-10056612)
chr3 (18-83)||(10058768-10058834)
chr3 (18-83)||(10060990-10061056)
chr3 (18-83)||(10063212-10063278)
chr3 (18-83)||(10065434-10065500)
chr3 (18-83)||(10067633-10067699)
chr3 (18-83)||(10209502-10209568)
chr3 (18-86)||(3617777-3617845)
[»] chr2 (2 HSPs)
chr2 (18-83)||(13655805-13655870)
chr2 (18-83)||(12647162-12647227)
[»] chr8 (3 HSPs)
chr8 (18-83)||(15290851-15290917)
chr8 (18-83)||(15471220-15471286)
chr8 (18-84)||(42575099-42575166)
[»] scaffold0565 (1 HSPs)
scaffold0565 (18-83)||(2380-2445)
[»] scaffold0137 (1 HSPs)
scaffold0137 (18-83)||(6602-6667)
[»] chr7 (6 HSPs)
chr7 (18-83)||(1560441-1560506)
chr7 (18-83)||(18388536-18388601)
chr7 (18-83)||(18391972-18392037)
chr7 (18-83)||(6592116-6592181)
chr7 (18-83)||(6594334-6594399)
chr7 (18-83)||(32060098-32060163)
[»] chr1 (1 HSPs)
chr1 (18-83)||(44203959-44204024)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 101 - 240
Target Start/End: Original strand, 55927916 - 55928057
Alignment:
Q  101 tttgtgggttcttcaccggtgaaaaa-tggtttataggtatttgcagataagggaaatgagaaatcttgcgaaaa-agtaaggtatagaagttaatttcc 198  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  55927916 tttgtgggttcttcactggtgaaaaaatggtttataggtatttgcagataagggaaatgagaaatcttgcgaaaaaagtaaggtatagaagttaatttcc 55928015  T
Q  199 acttctatgagaagttattggttaaatacttgtattattaca 240  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  55928016 acttctatgagaagttattggttaaatacttgtattattaca 55928057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 8395931 - 8395996
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||    
T  8395931 cacacatcattattctttgtattggtgtggttcgatccggtcttggaggtccggggattcacaaca 8395996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 8393722 - 8393787
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| || ||||||||||||||    
T  8393722 cacacatcattattctttgtattggtgtggttcgatccggtctttgaggtccggggattcacaaca 8393787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 5136393 - 5136459
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||| || ||||||||||||||    
T  5136393 cacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaaca 5136459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 5138618 - 5138684
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||| || ||||||||||||||    
T  5138618 cacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaaca 5138684  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 7123010 - 7123075
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| |  ||||||||||||||    
T  7123010 cacacatcattattctttgtattggtgtggttcgatccggccttggaggttcggggattcacaaca 7123075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 7125229 - 7125295
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaacac 84  Q
    |||||||||||||||||| ||||||||||||||||||||  ||||||| |  |||||||||||||||    
T  7125229 cacacatcattattctttatattggtgtggttcgatccggccttggaggttcggggattcacaacac 7125295  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 6027573 - 6027638
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  6027573 cacacatcattattctttgtattggtgtggttcgatccagtcttggagatccggggattcacaaca 6027638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 6136144 - 6136078
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaacac 84  Q
    |||||||||||||||||||||||||| ||||||||||||  ||||||| || |||||||||||||||    
T  6136144 cacacatcattattctttgtattggtatggttcgatccggccttggaggtccggggattcacaacac 6136078  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 33341944 - 33341878
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||| || ||||||||||||||    
T  33341944 cacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaaca 33341878  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 34167407 - 34167472
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    ||||||||||||||    
T  34167407 cacacatcattattctttgtattggtgtggttcgatccgaccttggaggctcggggattcacaaca 34167472  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 13154242 - 13154308
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||| || | ||||||||||||    
T  13154242 cacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccgaggattcacaaca 13154308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 13159098 - 13159164
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||| || | ||||||||||||    
T  13159098 cacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccgaggattcacaaca 13159164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 34165185 - 34165251
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||| |  ||||||||||||||    
T  34165185 cacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaaca 34165251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 25421633 - 25421698
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||    ||||||||||||||    
T  25421633 cacacatcattattctttgtattggtgtggttcgatccggccttggaggctcggggattcacaaca 25421698  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 10593585 - 10593650
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  10593585 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatacggggatacacaaca 10593650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 25078448 - 25078513
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    ||||||||||| |||||||||||||||||||||||||||  ||||||| |  ||||||||||||||    
T  25078448 cacacatcattcttctttgtattggtgtggttcgatccggccttggaggtttggggattcacaaca 25078513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 25136417 - 25136482
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    ||||||||||| |||||||||||||||||||||||||||  ||||||| |  ||||||||||||||    
T  25136417 cacacatcattcttctttgtattggtgtggttcgatccggccttggaggtttggggattcacaaca 25136482  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 40380418 - 40380483
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||    ||||||||||||||    
T  40380418 cacacatcattattctttgtattggtgtggttcgatccggccttggaggctcggggattcacaaca 40380483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 40382629 - 40382694
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||    ||||||||||||||    
T  40382629 cacacatcattattctttgtattggtgtggttcgatccggccttggaggctcggggattcacaaca 40382694  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 16544738 - 16544776
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccg 56  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16544738 cacacatcattattctttgtattggtgtggttcgatccg 16544776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 16546960 - 16546998
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccg 56  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16546960 cacacatcattattctttgtattggtgtggttcgatccg 16546998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 22536128 - 22536100
Alignment:
Q  29 attctttgtattggtgtggttcgatccga 57  Q
    |||||||||||||||||||||||||||||    
T  22536128 attctttgtattggtgtggttcgatccga 22536100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 25637757 - 25637822
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||    
T  25637757 cacacatcattattctttgtattggtgtggttcgatccgaccttggaggtccggggattcacaaca 25637822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 4598364 - 4598299
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |  ||||||||||||||    
T  4598364 cacacatcattattctttgtattggtgtggttcgatccgaccttggaggttcggggattcacaaca 4598299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 4600585 - 4600520
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |  ||||||||||||||    
T  4600585 cacacatcattattctttgtattggtgtggttcgatccgaccttggaggttcggggattcacaaca 4600520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 10211722 - 10211789
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatcaggggattcacaacac 84  Q
    |||||||||||||||| ||||||||||||||||||||| | |||||||| || |||||||||||||||    
T  10211722 cacacatcattattctctgtattggtgtggttcgatccgggtcttggaggtccggggattcacaacac 10211789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 10056546 - 10056612
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||| |  ||||||||||||||    
T  10056546 cacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaaca 10056612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 10058768 - 10058834
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||| |  ||||||||||||||    
T  10058768 cacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaaca 10058834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 10060990 - 10061056
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||| |  ||||||||||||||    
T  10060990 cacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaaca 10061056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 10063212 - 10063278
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||| |  ||||||||||||||    
T  10063212 cacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaaca 10063278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 10065434 - 10065500
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||| |  ||||||||||||||    
T  10065434 cacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaaca 10065500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 10067633 - 10067699
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||| |  ||||||||||||||    
T  10067633 cacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaaca 10067699  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 10209502 - 10209568
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||| ||||||||||||||||||||| | |||||||| || ||||||||||||||    
T  10209502 cacacatcattattctctgtattggtgtggttcgatccgggtcttggaggtccggggattcacaaca 10209568  T

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Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 3617777 - 3617845
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaacacaa 86  Q
    ||||||||||| || ||||||||||||||||||||||||| |||||||    |||||||||||||||||    
T  3617777 cacacatcattcttatttgtattggtgtggttcgatccgaccttggaggctcggggattcacaacacaa 3617845  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 13655870 - 13655805
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||    
T  13655870 cacacatcattattctttgtattggtgtggttcgatccgaccttggaggtccggggattcacaaca 13655805  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 12647227 - 12647162
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||    ||||||||||||||    
T  12647227 cacacatcattattctttgtattggtgtggttcgatccggccttggaggctcggggattcacaaca 12647162  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 15290851 - 15290917
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||| || ||||||||||||||    
T  15290851 cacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaaca 15290917  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 15471220 - 15471286
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||| || ||||||||||||||    
T  15471220 cacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaaca 15471286  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 42575166 - 42575099
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatcaggggattcacaacac 84  Q
    |||||||||||||  ||||||||||||||||||||||| | ||||||||    |||||||||||||||    
T  42575166 cacacatcattatagtttgtattggtgtggttcgatccgggtcttggaggctcggggattcacaacac 42575099  T

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Target: scaffold0565 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 2445 - 2380
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    ||||||||||||||    
T  2445 cacacatcattattctttgtattggtgtggttcgatccgaccttggaggctcggggattcacaaca 2380  T

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Target: scaffold0137 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 6602 - 6667
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||    
T  6602 cacatatcattattctttgtattggtgtggttcgatccggtcttggagactcggggattcacaaca 6667  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 1560506 - 1560441
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    ||||||||||||||    
T  1560506 cacacatcattattctttgtattggtgtggttcgatccgaccttggaggctcggggattcacaaca 1560441  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 18388601 - 18388536
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| |  ||||||||||||||    
T  18388601 cacacatcattattctttgtattggtgtggttcgatccggccttggaggttcggggattcacaaca 18388536  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 18392037 - 18391972
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| |  ||||||||||||||    
T  18392037 cacacatcattattctttgtattggtgtggttcgatccggccttggaggttcggggattcacaaca 18391972  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 6592181 - 6592116
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||    ||||||||||||||    
T  6592181 cacacatcattattctttgtattggtgtggttcgatccggccttggaggctcggggattcacaaca 6592116  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 6594399 - 6594334
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||    ||||||||||||||    
T  6594399 cacacatcattattctttgtattggtgtggttcgatccggccttggaggctcggggattcacaaca 6594334  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 32060163 - 32060098
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||| ||||||||||||||||||||  ||||||| |  ||||||||||||||    
T  32060163 cacacatcattattctttatattggtgtggttcgatccggccttggaggttcggggattcacaaca 32060098  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 44203959 - 44204024
Alignment:
Q  18 cacacatcattattctttgtattggtgtggttcgatccgatcttggagatcaggggattcacaaca 83  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    ||||||||||||||    
T  44203959 cacacatcattattctttgtattggtgtggttcgatccgaccttggaggctcggggattcacaaca 44204024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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