View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19992_low_3 (Length: 581)
Name: NF19992_low_3
Description: NF19992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19992_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 20 - 571
Target Start/End: Complemental strand, 43844972 - 43844423
Alignment:
| Q |
20 |
cattgattctcccttattctagtggttcatttatacgattctacagttactttatagtcttgtccttgcaatgtgctttccttcattccttggttcttaa |
119 |
Q |
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| T |
43844972 |
cattgattctcccttattctagtggttcatttatacgattctacagttactttatagtcttgtccttgcaatgtgctttccttcattccttggttcttaa |
43844873 |
T |
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| Q |
120 |
tcttagtattatggaacagtggatttgaatttgatcatattagaccctcttgtcaaagtttcaatattatctttatatttgttcatttttcttcaacaat |
219 |
Q |
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| T |
43844872 |
tcttagtattatggaacagtggatttgaatttga--atattagaccctcttgtcaaagtttcaatattatctttatatttgttcatttttcttcaacaat |
43844775 |
T |
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| Q |
220 |
ctgaagaataatcagaagtaacacaatgaactttgtaatagcctattccagaggaacttggcatcccatcatgacttctgatacaaccatccaaagttac |
319 |
Q |
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| T |
43844774 |
ctgaagaataatcagaagtaacacaatgaactttgtgatagcctattccagaggaacttggcatcccatcatgacttctgatacaaccatccaaagttac |
43844675 |
T |
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| Q |
320 |
tggttgaattggaaggttttggtttgtgtcatattaatcatactttcaaccatcttttcatcatttcttatatgcaagtacgaggttttacttttatcat |
419 |
Q |
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| T |
43844674 |
tggttgaattggaaggttttggtttgtgtcatattaatcatactttcaaccatcttttcatcatttcttatatgcaagtacgaggttttacttttatcat |
43844575 |
T |
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| Q |
420 |
ggaagccaacaagaaatgatgacatggaaatccaaaaagaaacatcatcttcatcaattttgtacgaggatgaaacttggaagcctagcctaaagggaat |
519 |
Q |
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| T |
43844574 |
ggaagccaacaagaaatgatgacatggaaatccaaaaagaaacatcatcatcatcaattttgtacgaggatgaaacttggaagcctagcctaaagggaat |
43844475 |
T |
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| Q |
520 |
tcacccggcatggttgttggcttttagaatttttgcatttattgtgcctatg |
571 |
Q |
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| T |
43844474 |
tcacccggcatggttgttggcttttagaatttttgcatttattgtgcttatg |
43844423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 469 - 566
Target Start/End: Complemental strand, 34894745 - 34894648
Alignment:
| Q |
469 |
ttcatcaattttgtacgaggatgaaacttggaagcctagcctaaagggaattcacccggcatggttgttggcttttagaatttttgcatttattgtgc |
566 |
Q |
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|||| |||||||||| ||||||||||||||||||||| | | || ||||||||||| || ||| | ||||||||| || ||||||| |||||||||| |
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| T |
34894745 |
ttcagcaattttgtatgaggatgaaacttggaagccttgtttgaaaggaattcaccctgcttggcttttggcttttcgagtttttgcgtttattgtgc |
34894648 |
T |
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