View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19992_low_4 (Length: 512)

Name: NF19992_low_4
Description: NF19992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19992_low_4
NF19992_low_4
[»] chr1 (2 HSPs)
chr1 (15-512)||(5161012-5161508)
chr1 (15-327)||(5158088-5158380)


Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 15 - 512
Target Start/End: Original strand, 5161012 - 5161508
Alignment:
Q  15 tcactgatttcttaaggtagtgtagattaggatcagttgttttatgtttgtaacagattgatatatgttaactgagaaaggaatattaaataatttttga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  5161012 tcactgatttcttaaggtagtgtagattaggatcagttgttttatgtttgtaacagattgatatatgttaactgagaaaggaatattaaatactttt-ga 5161110  T
Q  115 ttagacagaatgaaaatgcatcttcattgtttggaagatcgatttgcctgattggtttcttttcttgtgttacagtatcaatgacaggtccagttcgatt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5161111 ttagacagaatgaaaatgcatcttcattgtttggaagatcgatttgcctgattggtttcttttcttgtgttacagtatcaatgacaggtccagttcgatt 5161210  T
Q  215 ctatacacagcgtgcttcctttgtcccttgtcccgaagatgatttacaggaacttgagtgcaattgtttcatatgtacaatttgtttttaaactagacaa 314  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5161211 ctatacacagcgtgcttcctttgtaccttgtcccgaagatgatttacaggaacttaagtgcaattgtttcatatgtacaatttgtttttaaactagacaa 5161310  T
Q  315 tgaaatattctgtctgtccctcctctcggctcttctatgtgacattcatatccacctttacataaaaaatgcataatggagaggaatgagttgagggacg 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5161311 tgaaatattctgtctgtccctcctctcggctcttctatgtgacattcatatccacctttacataaaaaatgcataatggagaggaatgagttgagggacg 5161410  T
Q  415 gatatagcataagctcactcccatgccgtgcgagatatgaaacactctctcaccatagaaggcaccccttttcaaagtctacttttactttctatagt 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5161411 gatatagcataagctcactcccatgccgtgcgagatatgaaacactctctcaccatagaaggcaccctttttcaaagtctacttttactttctatagt 5161508  T

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Target: chr1; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 15 - 327
Target Start/End: Original strand, 5158088 - 5158380
Alignment:
Q  15 tcactgatttcttaaggtagtgtagattaggatcagttgttttatgtttgtaacagattgatatatgttaactgagaaaggaatattaaataatttttga 114  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||  |||||||||||| || | | ||||||    
T  5158088 tcactgatttcttaaggtagtgtagataatgatcagttgttttatgtttgtaacagattgatatgtgttaacgtagaaaggaatatcaagt-acttttga 5158186  T
Q  115 ttagacagaatgaaaatgcatcttcattgtttggaagatcgatttgcctgattggtttcttttcttgtgttacagtatcaatgacaggtccagttcgatt 214  Q
    |  ||||||||| ||||||||||||            |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  5158187 tctgacagaatgcaaatgcatcttc------------atcgatgtgcctgattggtttcttttcttgtgttacagtatcaatgacagatccagtccgatt 5158274  T
Q  215 ctatacacagcgtgcttcctttgtcccttgtcccgaagatgatttacaggaacttgagtgcaattgtttcatatgtacaatttgtttttaaactagacaa 314  Q
    ||||||||||||||||       |||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  5158275 ctatacacagcgtgct-------tcccttgtcgggaagatgatttacaggaacttgagtgcaattgtttcatttgtacaatttgtttttatactagacaa 5158367  T

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