View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19992_low_5 (Length: 457)
Name: NF19992_low_5
Description: NF19992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19992_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 23 - 433
Target Start/End: Original strand, 37446966 - 37447372
Alignment:
| Q |
23 |
cttgaaggtcccaagccaacactatcaggccacccaagtgagtctgagattgcctagagtaacaagagagtaatggttgagaaccactagaggtctcctt |
122 |
Q |
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| T |
37446966 |
cttgaaggtcccaagccaacactatcagaccacccaagtgagtct-agattgcctagagtaacaagagagtaatggttgagaaccactagaggtctcctt |
37447064 |
T |
|
| Q |
123 |
ccaaaacctttaagtcatttgatattaaactcacacttgaaccaaacaatatatccccccttaagtgtgggtctcctacatcttaaacttccaccatcgt |
222 |
Q |
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| T |
37447065 |
ccaaaacctttaagtcatttgatattaaactcacacttgaaccaaacaatatatccccccttaagtgtgggtctcctacatcttaaacttccaccatcgt |
37447164 |
T |
|
| Q |
223 |
tacaactaacagaacacaccactggactataccgctaagctttgatacaaggatttaatacaccatgatccactaccactcccccaacaaattgggggac |
322 |
Q |
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| T |
37447165 |
tacaactaacagaacacaccactggactataccgctaagctttgatacaaggatttaatacaccatgatccactaccactcccccaacaaattgggggac |
37447264 |
T |
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| Q |
323 |
cagtgctcttactccaattgttggtggagttccggcggcgagcatcaggagtagcaactgactaatgatagaggaccaccaagagattgggacattacat |
422 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37447265 |
cagtgctcttactccaattgttggtggagttc---cggcgagcatcaggagtagcaactgactaatgatagaggaccaccaagagattgggacattacat |
37447361 |
T |
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| Q |
423 |
ttcctcctaaa |
433 |
Q |
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| T |
37447362 |
ttcctcctaaa |
37447372 |
T |
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