View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19992_low_6 (Length: 387)
Name: NF19992_low_6
Description: NF19992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19992_low_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 146 - 387
Target Start/End: Original strand, 50531268 - 50531507
Alignment:
| Q |
146 |
gcttacggaaatgaaatttgaagtctataccttttacagctcaaaacttttattacaagtcaaatttctgaggactttccttaaattttaaaaaattgat |
245 |
Q |
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| T |
50531268 |
gcttacggaaatgaaatttgaagtctataccttttacagctcaaaacttttattacaagtcaaatttctgaggactttccttaaattttaaaaatttgat |
50531367 |
T |
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| Q |
246 |
tcctttagccataatagattgctgaccgtgtttaccaaagnnnnnnnnnnnttctaaccatgttatgcattaagtggataacttaatccacaagcccttt |
345 |
Q |
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| T |
50531368 |
tcctttagccataatagattgctgaccgtgtttaccaaag--aaaaaaaaattctaaccatgttatgcattaagtggataacttaatccacaagtccttt |
50531465 |
T |
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| Q |
346 |
tattattttgattccaattaatttcaatgtatgtaaaaatca |
387 |
Q |
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| T |
50531466 |
tattattttgattccaattaatttcaatgtatgtaaaaatca |
50531507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 50531111 - 50531225
Alignment:
| Q |
15 |
atgaaatgaacctttaaccatcgttttatttttgttaaaaagaaaactatttacttaaatacaaacccttaccacttagattggtcgcatgcaagtaaat |
114 |
Q |
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| T |
50531111 |
atgaaatgaacctttaaccatcattttatttttgttaaaaagaaaactatttacttaaatacaaacccttaccacttagattggtcgcatgcaagtaaat |
50531210 |
T |
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| Q |
115 |
atgaccttcattcaa |
129 |
Q |
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| T |
50531211 |
atgaccttcattcaa |
50531225 |
T |
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