View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19992_low_7 (Length: 364)
Name: NF19992_low_7
Description: NF19992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19992_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 173; Significance: 6e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 16954530 - 16954702
Alignment:
| Q |
40 |
tttaacaaaattccttcaaaacatttgggtattttcaagtataacttcatcctaaattctacggagtaggatactcatactacgagatgaaccatcgata |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16954530 |
tttaacaaaattccttcaaaacatttgggtattttcaagtataacttcatcctaaattctacggagtaggatactcatactacgagatgaaccatcgata |
16954629 |
T |
|
| Q |
140 |
actggccacaaatttcaataccgtcacttaaacaaacctctacgacaggaataagtaaatatcacaacaatag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16954630 |
actggccacaaatttcaataccgtcacttaaacaaacctctacgacaggaataagtaaatatcacaacaatag |
16954702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 219 - 362
Target Start/End: Original strand, 16954776 - 16954919
Alignment:
| Q |
219 |
ttcgaacatttgtaaaaatttatgaaaatctattggaagtttacaatctttgatttgatcatagcaccttttcctcaaactttcactcaaatccaaacta |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16954776 |
ttcgaacatttgtaaaaatttatgaaaatctattggaagtttacaatctttgatttgatcataacaccttttcctcaaactttcactcaaatccaaacta |
16954875 |
T |
|
| Q |
319 |
aaacataatcccaggtcaagagattcaagaagaagacatccatt |
362 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| |||||||||| |
|
|
| T |
16954876 |
aaacataatcctaggtcaagcgattcaagaagaggacatccatt |
16954919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 245 - 364
Target Start/End: Original strand, 16965381 - 16965500
Alignment:
| Q |
245 |
aatctattggaagtttacaatctttgatttgatcatagcaccttttcctcaaactttcactcaaatccaaactaaaacataatcccaggtcaagagattc |
344 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16965381 |
aatctactggaagtttaaaatctttgatttgatcatagcaccttttcctcaatctttcactccaatccaacctaaaacataatcccaggtcaagagattc |
16965480 |
T |
|
| Q |
345 |
aagaagaagacatccattaa |
364 |
Q |
| |
|
||||||| |||| |||||| |
|
|
| T |
16965481 |
aagaagagaacattcattaa |
16965500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University