View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19992_low_8 (Length: 346)
Name: NF19992_low_8
Description: NF19992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19992_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 5161990 - 5161662
Alignment:
| Q |
1 |
ccagcgaatatgaccggtcaatcgacacatgaacaaagacctgtcattagttgtttccataagctctagcagacaatctaaacaaaaaattgtaatagat |
100 |
Q |
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| T |
5161990 |
ccagcgaatatgatcggtcaatcgacacatgaacaaagacctatcattagttgtttccataagctctagcagacagtccaaaaaaaaaactgtaatagat |
5161891 |
T |
|
| Q |
101 |
gtttatagattaattccattttaaagaaattaannnnnnnn-gttaagtagtccaatgattgaaatctcaccttttaaggtgaataagtgggaaatacgg |
199 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5161890 |
gtttatagattaattccattttaaagaaattaatttttttttgttaagtagtccaatgattgaaatctcaccttttaaggtgaataagtgggaaatacgg |
5161791 |
T |
|
| Q |
200 |
attcgcaccccaacactgcatatataatgcaatctccannnnnnnctctcatgttctctaatgtgtcatgtcatcaatctcatccttaaactttgtcata |
299 |
Q |
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||||| |||| | ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5161790 |
attcgaacccga-caccgcatatataatgcaatctccatttttttctctcatgttctctaatgtgtcatgtcatcaatctcatccttaaactttgtcata |
5161692 |
T |
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| Q |
300 |
tctaaaactcaccttttttattcaattgtg |
329 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5161691 |
tctaaaactcaccttttttattcaattgtg |
5161662 |
T |
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