View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_high_17 (Length: 292)
Name: NF19993_high_17
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_high_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 55668130 - 55667837
Alignment:
| Q |
1 |
ttttaatatacaactgtgctctcagctacttctcattatgctcattataattactaataagttgcattttgtgtaatgacacttaagcatgatgttttgc |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
55668130 |
ttttaatatagaactgtgctctcagctacttctcattatgctcattataattactaataagttgcattttttgtaatgacacttaagcatgatgtgttgc |
55668031 |
T |
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| Q |
101 |
tctcattagagcatgtaattttcagagggaaactatatcctacggccgcggtcatttaaattgtttaatcatatcatattggtcatttaaagtttctttg |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
55668030 |
tctcattagagcatgaaattttcagagggaaactatatcctacggccgcggtcatttaaattgtttaatcatatcatattggtcatctaaagtttctttg |
55667931 |
T |
|
| Q |
201 |
tttgacctaggtcttttaaatctcattacttccacattgttatcttttttgtcacacattctgttataaaaataaac--atctgttacgtggct |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
55667930 |
tttgacctaggtcttttaaatctcattacttccacattgttatcttttttgtcacacattctgttataaaaatacacatatctgttacgtggct |
55667837 |
T |
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