View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_high_18 (Length: 288)
Name: NF19993_high_18
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 37539686 - 37539603
Alignment:
| Q |
34 |
tctaaatcatttacaagatccaaaccaaagactttgcttaatagacccgagtccaaatttacttgttataatctagtgttgatat |
118 |
Q |
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| T |
37539686 |
tctaaatcatttacaagacccaaaccaaa-actttgcttaatagacccgagtccaaatttacttgttataatctagtattgatat |
37539603 |
T |
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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 37539510 - 37539447
Alignment:
| Q |
210 |
agggactagatcctttcaatatattattcgattcaaaacaaaatgtaggttggtaggaatattg |
273 |
Q |
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| T |
37539510 |
agggactagatcctttcaatatattattcgatttaaaacaaaatgtaggttggtaagaatattg |
37539447 |
T |
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