View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19993_high_2 (Length: 594)
Name: NF19993_high_2
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 190 - 580
Target Start/End: Original strand, 44827939 - 44828320
Alignment:
| Q |
190 |
gtgatttgaggaagactgatttaccagagttgacatgaagaagttgaaacttgtgatgtttatgtgttatctttgatggaatttgctgaattgaccgaac |
289 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44827939 |
gtgatttgaggaagactgattttccggagttgacatgaagaagttgaaacttgtgatgtttatgtgttatctttgatggaaattgctgaattgaccgaac |
44828038 |
T |
|
| Q |
290 |
tatatataggtgtgtttgatcaagtttttcttcgctgcatttcaacgtttgagtgtgatttgtacattataggataggtttttagttttgcatgaagcaa |
389 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44828039 |
----tataggtgtgtttgatcaagtttatcttcgctgcattttggcgtttgagagtgatttgtacatt-----ataggtttttagttttgcatgaagcaa |
44828129 |
T |
|
| Q |
390 |
ctatactcaaatttatgtcctgtttgttttcaaacattgtttctggactgtccatattgtttgnnnnnnnccctacagtgtgttagatcttatcacgtac |
489 |
Q |
| |
|
|||||| |||||||||||||||||||| ||| | |||| | ||||| |||||||||||||||| |||| ||||||| ||||||| ||||||| |
|
|
| T |
44828130 |
ctatacccaaatttatgtcctgtttgtattcgagcattatatctgggctgtccatattgtttgtttttttccctgaagtgtgtatgatcttaacacgtac |
44828229 |
T |
|
| Q |
490 |
cttctcaggcgttacaaagtacttatgtgtgttgaatttggacctaaatattttatggtaacatgaatttgttcttgctagatttcttcat |
580 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44828230 |
cttcctaggtgttacaaagtacttatgtgtgttgaatttcgacctaaatattttatggtaacatgaatttgttcttgctagatttcttcat |
44828320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 5477937 - 5478006
Alignment:
| Q |
34 |
aaaatggtttttgaagaattagcaattgatagcggaattgaggttcttaaatgtctaatattttccagaa |
103 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5477937 |
aaaacggtttttgaagaattagcaattgatagcagaattgaggttcttaaatgtctaatattttccagaa |
5478006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 2685377 - 2685308
Alignment:
| Q |
34 |
aaaatggtttttgaagaattagcaattgatagcggaattgaggttcttaaatgtctaatattttccagaa |
103 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2685377 |
aaaacggtttttgaagaattagcaattgatagcagaattgaggttcttaaatgtctaatattttccagaa |
2685308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 45008801 - 45008732
Alignment:
| Q |
34 |
aaaatggtttttgaagaattagcaattgatagcggaattgaggttcttaaatgtctaatattttccagaa |
103 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45008801 |
aaaacggtttttgaagaattagcaattgatagcagaattgaggttcttaaatgtctaatattttccagaa |
45008732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University