View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_high_26 (Length: 258)
Name: NF19993_high_26
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 36522386 - 36522617
Alignment:
| Q |
10 |
ataatactctgggtggtccatcataagacaattcacgtatgatccatcatttccctgttgattttcgtcctatatttatgttgtcacaataagtaagtat |
109 |
Q |
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| T |
36522386 |
ataatactctgggtggtccatcattagacaattcacgtatgatccatcatttccctgttgattttcgtcctatatttatgttgtcacaacaagtaagtat |
36522485 |
T |
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| Q |
110 |
attgaacgactaaaatgactattaaccctaaattaaactctagactatcataaaatgtatttacctctgcgtttcccaaatcatcccaaagtcgaagaat |
209 |
Q |
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| T |
36522486 |
attgaacgactaaaatgactattaaccctaaattaaactctagactatcataaaatgtatttacctctgcgtttcccaaatcatcccaaagtcgaagaat |
36522585 |
T |
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| Q |
210 |
tgtggcaggggaggaaataatggatggggttg |
241 |
Q |
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| T |
36522586 |
tgtggcaggggaggaaataatggatggggttg |
36522617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 45615720 - 45615753
Alignment:
| Q |
95 |
acaataagtaagtatattgaacgactaaaatgac |
128 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
45615720 |
acaataagtaagtatattgaaggactaaaatgac |
45615753 |
T |
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