View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_high_29 (Length: 253)
Name: NF19993_high_29
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_high_29 |
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| [»] scaffold0078 (3 HSPs) |
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| [»] scaffold0184 (1 HSPs) |
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Alignment Details
Target: scaffold0078 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 21127 - 21371
Alignment:
| Q |
1 |
cgtatgtaacactaaaataacaca-aaagagaagacaagttttgcttcttaaaacatcctaaaattgtgtagcacccttgtatatagttaactacaacgt |
99 |
Q |
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| T |
21127 |
cgtatgtaacactaaaataacgcacaaagagaagacaagttttgcttcttaaaacatcctaaaattgtgcagcacccttatatatagagaactacaacgt |
21226 |
T |
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| Q |
100 |
ttgagttaaacacctattgtagtccattccaatggcaaaaccaactcacatagctgttattccaagtcctggtttcagccacttagtcccaatagttgaa |
199 |
Q |
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| T |
21227 |
ttgagttaaacatctattgtagtccattccaatggcaaaaacaattcacatagctgttattccaagtcctggttttagccacttagtcccaatagttgaa |
21326 |
T |
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| Q |
200 |
ttcaccaaaagattagtcacaaatcacccaaattttcatctcact |
244 |
Q |
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| T |
21327 |
ttcaccaaaagattagtcacaaaccacccaaattttcatgtcact |
21371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 114 - 244
Target Start/End: Original strand, 56527 - 56657
Alignment:
| Q |
114 |
tattgtagtccattccaatggcaaaaccaactcacatagctgttattccaagtcctggtttcagccacttagtcccaatagttgaattcaccaaaagatt |
213 |
Q |
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| T |
56527 |
tattgtagtccattccaatggcaaaaacaattcacatagctgttattccaagtcctggtttcagccacttagtcccaatagttgaattctccaaaagatt |
56626 |
T |
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| Q |
214 |
agtcacaaatcacccaaattttcatctcact |
244 |
Q |
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| T |
56627 |
agttacaaaccatccaaattttcatgtcact |
56657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 1999 - 2108
Alignment:
| Q |
129 |
caatggcaaaaccaactcacatagctgttattccaagtcctggtttcagccacttagtcccaatagttgaattcaccaaaagattagtcacaaatcaccc |
228 |
Q |
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| T |
1999 |
caatggcaaaagcaactcacattgctgttatttcaagccctggtttcagccacatagccccaatagtagaattctccaaaagattagtcacaaatcatca |
2098 |
T |
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| Q |
229 |
aaattttcat |
238 |
Q |
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|||||||||| |
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| T |
2099 |
aaattttcat |
2108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 114 - 244
Target Start/End: Complemental strand, 16317 - 16187
Alignment:
| Q |
114 |
tattgtagtccattccaatggcaaaaccaactcacatagctgttattccaagtcctggtttcagccacttagtcccaatagttgaattcaccaaaagatt |
213 |
Q |
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| T |
16317 |
tattgtagtccattccaatggcaaaaacaattcacatagctgttattccaagtcctggtttcagccacttagtcccaatagttgaattctccaaaagatt |
16218 |
T |
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| Q |
214 |
agtcacaaatcacccaaattttcatctcact |
244 |
Q |
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| T |
16217 |
agttacaaaccatccaaattttcatgtcact |
16187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 16565655 - 16565770
Alignment:
| Q |
129 |
caatggcaaaaccaactcacatagctgttattccaagtcctggtttcagccacttagtcccaatagttgaattcaccaaaagattagtcacaaatcaccc |
228 |
Q |
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||||||||||| ||| |||||||||||||||| |||| ||||||||||||||| ||| ||||||||| |||||| |||||||||||||||||||||| || |
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| T |
16565655 |
caatggcaaaaacaagtcacatagctgttatttcaagccctggtttcagccacatagccccaatagtagaattctccaaaagattagtcacaaatcatcc |
16565754 |
T |
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| Q |
229 |
aaattttcatctcact |
244 |
Q |
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| T |
16565755 |
aaattttcatgtcact |
16565770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 16600007 - 16599892
Alignment:
| Q |
129 |
caatggcaaaaccaactcacatagctgttattccaagtcctggtttcagccacttagtcccaatagttgaattcaccaaaagattagtcacaaatcaccc |
228 |
Q |
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||||||||||| ||| |||||||||||||||| |||| ||||||||||||||| ||| ||||||||| |||||| |||||||||||||||||||||| || |
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| T |
16600007 |
caatggcaaaaacaagtcacatagctgttatttcaagccctggtttcagccacatagccccaatagtagaattctccaaaagattagtcacaaatcatcc |
16599908 |
T |
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| Q |
229 |
aaattttcatctcact |
244 |
Q |
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| T |
16599907 |
aaattttcatgtcact |
16599892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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