View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_high_30 (Length: 250)
Name: NF19993_high_30
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 32508688 - 32508463
Alignment:
| Q |
1 |
ttccaatttatcatgatcttaatctaggactagattcccttctatgtaaccaatgagtccatgatgacatgcttaattattcagcaccatttttcaatgt |
100 |
Q |
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| T |
32508688 |
ttccaatttatcatgatcttaatctatgactagattcccttctatgtaaccaatgagtccatgatgacatgcttaatttttcagcaccatttttcaatgt |
32508589 |
T |
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| Q |
101 |
ttactcatgttgaagtaagattattaagcagcaaggcaatgcctgaggtattatatatcttatttattcctttgcttcatgtttgagttcgtttttccaa |
200 |
Q |
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| T |
32508588 |
tt---------gaagtaagattattaagcagcaaggcaatgcctgaggcattatatatcttatttattcctttgcttcatgtttgagttcgtttttccaa |
32508498 |
T |
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| Q |
201 |
gattgatttaggaaaacgaatgcgatgtctattat |
235 |
Q |
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| T |
32508497 |
gattgatttaggaaaacgaatgcgatgtctattat |
32508463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 21903961 - 21903846
Alignment:
| Q |
44 |
atgtaaccaatgagtccatgatgacatgcttaattattcagcaccatttttcaatgtttactcatgttgaagtaagattattaagcagcaaggcaatgcc |
143 |
Q |
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| T |
21903961 |
atgtaacca-tgagtccatgatgacatgcataattattcagta-ttgttttcaatgtttacttgtgttcatgtaagattattaagcagcaaggcaatgcc |
21903864 |
T |
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| Q |
144 |
tgaggtattatatatctt |
161 |
Q |
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| T |
21903863 |
tgaggtattatatatctt |
21903846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 32513194 - 32513092
Alignment:
| Q |
59 |
ccatgatgacatgcttaattattcagcaccatttttcaatgtttactcatgttgaagtaagattattaagcagcaaggcaatgcctgaggtattatatat |
158 |
Q |
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|||||| ||| |||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||| ||||||||| ||||||||| |
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| T |
32513194 |
ccatgacgacgtgcttaatacttcagcaccatttttcaatgtttacttgtgttgatctaagattattaagcaacaaggcattgcctgaggcattatatat |
32513095 |
T |
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| Q |
159 |
ctt |
161 |
Q |
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||| |
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| T |
32513094 |
ctt |
32513092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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