View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_high_7 (Length: 455)
Name: NF19993_high_7
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 15215118 - 15214679
Alignment:
| Q |
1 |
aatatgtggaagcatacacaatgaacaaaatataactaagtccacctctattttcatcacataaaagtatcattggagaattcattcacagttaggtcat |
100 |
Q |
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| T |
15215118 |
aatatgtggaagcatacacaatgaacaaaatataactaagtccacctctattttcatcacataaaagtatcattggagaattcattcacagttagatcat |
15215019 |
T |
|
| Q |
101 |
gcaaaccaaaatcattatccacaaccaatccatcagaaacatccaagttcctaggccttgacaacgagttacccgaattcggaacaaaattgttgttctt |
200 |
Q |
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| T |
15215018 |
gcaaaccaaaatcattatccacaaccaatccatcagaaacatccaagttcctaggccttgacaacgagttacccgaattcggaacaaaattgttgttctt |
15214919 |
T |
|
| Q |
201 |
gacatattcaaatgagttatagccactctgctgttgccgaggcgcttgaatctgttccttgttccatggaaatggcttagtcacttgatgatgaacttga |
300 |
Q |
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| T |
15214918 |
gacatattcaaatgagttatagccactctgctgttgccgaggcgcttgaatttgctccttgttccatggaaatggcttagtcacttgatgatgaacttga |
15214819 |
T |
|
| Q |
301 |
ttataacttgtgctactaagttgtgacattaacctagctgttgtgtcatgttgaacattctgtttgctactaccttgttgaaagtttaaggtaataggtc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15214818 |
ttataacttgtgctactaagttgtgacattaacctagctgttgtgtcatgttgaacattctgtttgctactaccttgttgaaagtttaaggtaataggtc |
15214719 |
T |
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| Q |
401 |
ctttatgaacacctagcgacgacgacgaggacaaagttgt |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
15214718 |
ctttatgaacacctagcgacgacgacgaggacaaagttgt |
15214679 |
T |
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