View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_low_1 (Length: 636)
Name: NF19993_low_1
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 11 - 619
Target Start/End: Original strand, 5900467 - 5901070
Alignment:
| Q |
11 |
atcatcacaatatcaaaataataacatattcacacatgattttgttctttttcagtgttatttaaatatcttgtatctttaattgattatatctataaat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5900467 |
atcatcacaatatcaaaataataacatattcacacatgattttgttctttttcagtgttatttaaatatcttgtatctttaattgattatatctataaat |
5900566 |
T |
|
| Q |
111 |
actacattattgcaagaattaatctgcaatcacaatatcaaccttgaatgacaacacaatagattgcaattctcaacaatatcaaccactcattggatca |
210 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5900567 |
gctacattattgcaagaattaatctgcaatca-----tcaaccttgaatgacgacacaatagattgcaattctcaacaatatcaaccactcattggatca |
5900661 |
T |
|
| Q |
211 |
caattctccgcaatatcaagaaccataacacgaccacagctacaatctaaaaccctaagtctataacgatgaagcacatacactcctcggattagacgtg |
310 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5900662 |
caattctccgcaatatcaagaaccacaacacgaccacagctacaatctaaaaccctaagtctataacgatgaagcacatacacacctcggattagacgtg |
5900761 |
T |
|
| Q |
311 |
ccccaggttcagacatgtgtttgtgtttgtgtcgtgtccatattcgtgcttcatatgtgtataataattaaccagccctaacaaaaacataactaacata |
410 |
Q |
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||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5900762 |
tcccaggttcagacatgtgtttgtgtctgtgtcgtgtccgtattcgtgattcatatgtgtataataattaaccagccctaacaaaaacataactaacatc |
5900861 |
T |
|
| Q |
411 |
accttatcaagtaaacacaatcacacataacctaaattaaaacaaaatcatcccnnnnnnnntacttttcaaccctaattaatcaagaaaatgtgttctc |
510 |
Q |
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| T |
5900862 |
accttatcaagtaaacacacccacacataacctaaattaaaacaaaatgatcccaaaaaaaatacttttcaaccctaattaatcaagaaaatgtgttctc |
5900961 |
T |
|
| Q |
511 |
accgagattcgattgaggaactgcagcaggcactccattcgcattggttaacggaatacttttactagcattgtaaacattcataacattctgcacacca |
610 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5900962 |
accgagattcgcttgaggaactgcagcaggcactccattcgcattggttaacggaatacttttactagcattgtaaacattcataacattctgcacacca |
5901061 |
T |
|
| Q |
611 |
ttcaagaac |
619 |
Q |
| |
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||||||||| |
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| T |
5901062 |
ttcaagaac |
5901070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 27 - 245
Target Start/End: Original strand, 5861636 - 5861854
Alignment:
| Q |
27 |
aataataacatattcacacatgattttgttctttttcagtgttatttaaatatcttgtatctttaattgattatatctataaatactacattattgcaag |
126 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| || |||||| |
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| T |
5861636 |
aataagaacatattcacacatgattttgttctttttcagtgttattaaaatatcttgtatctttaattgattgcatctataaaaactacaatagtgcaag |
5861735 |
T |
|
| Q |
127 |
aattaatctgcaatcacaatatcaaccttgaatgacaacacaatagattgcaattctcaacaatatcaaccactcattggatcacaattctccgcaatat |
226 |
Q |
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|||||||||||||||||||||| | |||||||| || ||||||| ||||||||||||| ||||||||||||||||||| || |||||||||||||||||| |
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| T |
5861736 |
aattaatctgcaatcacaatattagccttgaataacgacacaatcgattgcaattctccacaatatcaaccactcattagagcacaattctccgcaatat |
5861835 |
T |
|
| Q |
227 |
caagaaccataacacgacc |
245 |
Q |
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|||||| || | ||||||| |
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| T |
5861836 |
caagaatcaaagcacgacc |
5861854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 307
Target Start/End: Original strand, 27277782 - 27277810
Alignment:
| Q |
279 |
atgaagcacatacactcctcggattagac |
307 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
27277782 |
atgaagcacatacactcctcggattagac |
27277810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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