View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19993_low_10 (Length: 423)

Name: NF19993_low_10
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19993_low_10
NF19993_low_10
[»] chr3 (6 HSPs)
chr3 (5-286)||(29214587-29214868)
chr3 (282-407)||(29214904-29215029)
chr3 (176-243)||(32208072-32208139)
chr3 (176-242)||(36924412-36924477)
chr3 (176-239)||(52041546-52041608)
chr3 (1-38)||(38272690-38272727)
[»] chr2 (1 HSPs)
chr2 (176-243)||(879469-879536)
[»] chr7 (2 HSPs)
chr7 (176-243)||(47992414-47992481)
chr7 (177-243)||(9639275-9639341)
[»] chr8 (2 HSPs)
chr8 (176-243)||(105459-105528)
chr8 (174-243)||(42192870-42192939)
[»] chr1 (2 HSPs)
chr1 (176-231)||(50746512-50746567)
chr1 (178-238)||(43325438-43325497)
[»] chr4 (1 HSPs)
chr4 (177-243)||(13597904-13597970)
[»] scaffold0172 (1 HSPs)
scaffold0172 (198-243)||(19454-19499)
[»] chr6 (1 HSPs)
chr6 (198-243)||(30438100-30438144)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 286
Target Start/End: Original strand, 29214587 - 29214868
Alignment:
Q  5 ttttttagcttccttaatttaaaaaggaaaaataggttattttccctcatctcctccaaaatcgagctcctcattagtcattagtataatacgggacttc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||    
T  29214587 ttttttagcttccttaatttaaaaaggaaaaataggttattttctctcatctcctccaaaatcgagcacctcattagtcattactataagacgggacttc 29214686  T
Q  105 atgacatgt-gaggatgcaagcagagtcttatctnnnnnnnnttagggttttgctaaaaaatatcttaaaatattgtttaagaaaatcatagatagaaat 203  Q
    ||||||||| ||||||||||||| || |||||||        |||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||    
T  29214687 atgacatgttgaggatgcaagcatagacttatctaaaaaaa-ttagggttttgctaaaaagtgtcttaaaacattgtttaagaaaatcatagatagaaat 29214785  T
Q  204 attctcttgaaaacataagtcaaacatatgaaaaagtaatgataatacatgcaaaagttactaccattgatttcttaaactat 286  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||    
T  29214786 attctcttgaaaacataagtcaaatatatgaaaaagtaatgatcatacatgcaaaagttactaccattaattgcttaaactat 29214868  T

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Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 282 - 407
Target Start/End: Original strand, 29214904 - 29215029
Alignment:
Q  282 actatacgatctaaaccttaaacaaatttacccggtcgaacatactaaatttgagtttaactctcaatctttgaccatatgtgtcaacccatgttggtat 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29214904 actatacgatctaaaccttaaacaaatttacccggtcgaacatactaaatttgagtttaactctcaatctttgaccatatgtgtcaacccatgttggtat 29215003  T
Q  382 tgtatttcaatttcttctatagaata 407  Q
    ||||||||||||||| ||||||||||    
T  29215004 tgtatttcaatttctactatagaata 29215029  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 32208072 - 32208139
Alignment:
Q  176 attgtttaagaaaatcatagatagaaatattctcttgaaaacataagtcaaacatatgaaaaagtaat 243  Q
    ||||||||||||||||||| ||| ||||||| | || |||||||||||||||||||||||||||||||    
T  32208072 attgtttaagaaaatcataaataaaaatatttttttaaaaacataagtcaaacatatgaaaaagtaat 32208139  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 36924477 - 36924412
Alignment:
Q  176 attgtttaagaaaatcatagatagaaatattctcttgaaaacataagtcaaacatatgaaaaagtaa 242  Q
    |||||||||| |||||||| ||| |||||||||||| ||||||||| |||||||||| |||||||||    
T  36924477 attgtttaaggaaatcata-ataaaaatattctcttaaaaacataattcaaacatataaaaaagtaa 36924412  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 52041546 - 52041608
Alignment:
Q  176 attgtttaagaaaatcatagatagaaatattctcttgaaaacataagtcaaacatatgaaaaag 239  Q
    |||||||||  ||| |||| |||||||||||||||  ||||||||| |||||||||||||||||    
T  52041546 attgtttaatgaaaccataaatagaaatattctctc-aaaacataaatcaaacatatgaaaaag 52041608  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 38272727 - 38272690
Alignment:
Q  1 aacattttttagcttccttaatttaaaaaggaaaaata 38  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  38272727 aacattttatagcttccttaatttaaaaaagaaaaata 38272690  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 879469 - 879536
Alignment:
Q  176 attgtttaagaaaatcatagatagaaatattctcttgaaaacataagtcaaacatatgaaaaagtaat 243  Q
    |||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  879469 attgtttaagcaaaccataaatagaaatattcttttgaaaacataagtcaaacatatgaaaaagtaat 879536  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 47992414 - 47992481
Alignment:
Q  176 attgtttaagaaaatcatagatagaaatattctcttgaaaacataagtcaaacatatgaaaaagtaat 243  Q
    |||||||||| |||||||| ||| ||||||||| |||||||||||||| ||| |||||||||||||||    
T  47992414 attgtttaaggaaatcataaatataaatattcttttgaaaacataagttaaatatatgaaaaagtaat 47992481  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 9639275 - 9639341
Alignment:
Q  177 ttgtttaagaaaatcatagatagaaatattctcttgaaaacataagtcaaacatatgaaaaagtaat 243  Q
    ||||||||  ||| |||| || |||||||||||||||||||| || |||||||||||||||||||||    
T  9639275 ttgtttaaagaaaccataaatcgaaatattctcttgaaaacacaaatcaaacatatgaaaaagtaat 9639341  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 105528 - 105459
Alignment:
Q  176 attgtttaagaaaatcatagatagaaa--tattctcttgaaaacataagtcaaacatatgaaaaagtaat 243  Q
    ||||||||||||||||||| ||| |||  |||||||||||||||| ||||||||||||||||||| ||||    
T  105528 attgtttaagaaaatcataaataaaaaaatattctcttgaaaacacaagtcaaacatatgaaaaaataat 105459  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 42192939 - 42192870
Alignment:
Q  174 atattgtttaagaaaatcatagatagaaatattctcttgaaaacataagtcaaacatatgaaaaagtaat 243  Q
    ||||| |||||  |||| ||| ||| ||||||| ||||||||| |||||||||| |||||||||||||||    
T  42192939 atattatttaaagaaataataaatataaatattttcttgaaaatataagtcaaatatatgaaaaagtaat 42192870  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 50746567 - 50746512
Alignment:
Q  176 attgtttaagaaaatcatagatagaaatattctcttgaaaacataagtcaaacata 231  Q
    |||||||||| |||||||| |||||||| || ||||||||||||||||||||||||    
T  50746567 attgtttaaggaaatcataaatagaaatgttttcttgaaaacataagtcaaacata 50746512  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 43325497 - 43325438
Alignment:
Q  178 tgtttaagaaaatcatagatagaaatattctcttgaaaacataagtcaaacatatgaaaaa 238  Q
    |||||||| ||| |||| ||| |||||||||||||||||||| ||||||||||||||||||    
T  43325497 tgtttaaggaaaccataaataaaaatattctcttgaaaacat-agtcaaacatatgaaaaa 43325438  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 13597970 - 13597904
Alignment:
Q  177 ttgtttaagaaaatcatagatagaaatattctcttgaaaacataagtcaaacatatgaaaaagtaat 243  Q
    ||||||||  ||| |||| || |||||||||||||||||||| || |||||||||||||||||||||    
T  13597970 ttgtttaaagaaaccataaatcgaaatattctcttgaaaacacaaatcaaacatatgaaaaagtaat 13597904  T

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Target: scaffold0172 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 19454 - 19499
Alignment:
Q  198 agaaatattctcttgaaaacataagtcaaacatatgaaaaagtaat 243  Q
    |||||| || |||||||||||||||||||||| ||| |||||||||    
T  19454 agaaattttatcttgaaaacataagtcaaacacatgtaaaagtaat 19499  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 30438144 - 30438100
Alignment:
Q  198 agaaatattctcttgaaaacataagtcaaacatatgaaaaagtaat 243  Q
    ||||||||| |||||||| ||||| |||||||||||||||||||||    
T  30438144 agaaatattttcttgaaa-cataaatcaaacatatgaaaaagtaat 30438100  T

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