View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_low_12 (Length: 384)
Name: NF19993_low_12
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 15724630 - 15724988
Alignment:
| Q |
11 |
cacagacgaattttgtcgaacaatgtctccaaacactctgtgcacccatcattgttaaggtctccagaacactgaaccaaaccataccttttctccgtat |
110 |
Q |
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| T |
15724630 |
cacagatgaattttgtcgaacaatgtctccaaacactctgtgcacccatcattgttaaggtctccagaacactgaaccaaaccgtaccttttctccgtat |
15724729 |
T |
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| Q |
111 |
cactccaattcaactcactcgttgcccataattggttcgcttctgtcatctttctcatcaaactcctcatcaaatctactgctttcccaagttctgttga |
210 |
Q |
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| T |
15724730 |
cactccaattcaactcactcgttgcccatgattggttcgcttctgtcatctttctcatcaaactcctcatcaaatctactgctttcccaatttctgttga |
15724829 |
T |
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| Q |
211 |
gtcctttacgctattggagccagtaatattccatgacggtgttacgacaacttttccaaagtaattttggttcgagtaacgaataatgcatatatcatac |
310 |
Q |
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| T |
15724830 |
gtcctttacgctattggagccagtaatattccatgacggtgttacgacaacttttccaaagtaattttggttcgagtaacgaataatgcatatatcatac |
15724929 |
T |
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| Q |
311 |
catattacagctgacacaccattaggacaacgttgagaaatttcattaatagcactatt |
369 |
Q |
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| T |
15724930 |
catattacagctgacacaccattaggacaacgttgagaaatttcattaatagcactatt |
15724988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 15801696 - 15801791
Alignment:
| Q |
43 |
acactctgtgcacccatcattgttaaggtctccagaacactgaaccaaaccataccttttctccgtatcactccaattcaactcactcgttgccca |
138 |
Q |
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| T |
15801696 |
acactctttgcacccatccttactaaggtctctattacactgcaccaaaccataccttttctcggtgtcactccaaatgaactcacccgttgccca |
15801791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 15713835 - 15713914
Alignment:
| Q |
40 |
caaacactctgtgcacccatcattgttaaggtctccagaacactgaaccaaaccataccttttctccgtatcactccaat |
119 |
Q |
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| T |
15713835 |
caaacactctttacatccattattatcaagatctccagcacactgaaccaaaccatatcttttctcggtatcactccaat |
15713914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 138
Target Start/End: Original strand, 15793891 - 15793992
Alignment:
| Q |
37 |
ctccaaacactctgtgcacccatcattgttaaggtctccagaacactgaaccaaaccataccttttctccgtatcactccaattcaactcactcgttgcc |
136 |
Q |
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| T |
15793891 |
ctccaaacactgtctacacccatccttactaaggtctctattacactgcaccataccataccttttctcagtgtcactccaattgaactcacccattgcc |
15793990 |
T |
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| Q |
137 |
ca |
138 |
Q |
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|| |
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| T |
15793991 |
ca |
15793992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 267
Target Start/End: Original strand, 15801847 - 15801923
Alignment:
| Q |
191 |
gctttcccaagttctgttgagtcctttacgctattggagccagtaatattccatgacggtgttacgacaacttttcc |
267 |
Q |
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| T |
15801847 |
gctttcccaagttctgttgagtccttaacgtttctggatccggttatattccatgatggtgttacaataacttttcc |
15801923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 15705968 - 15706047
Alignment:
| Q |
230 |
ccagtaatattccatgacggtgttacgacaacttttccaaagtaattttggttcgagtaacgaataatgcatatatcata |
309 |
Q |
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| T |
15705968 |
ccagtaacattccatgatggtgttacagaaacttttccaaagaaattcttgttagagtaacgtatgatgcatacatcata |
15706047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 15700131 - 15700224
Alignment:
| Q |
230 |
ccagtaatattccatgacggtgttacgacaacttttccaaagtaattttggttcgagtaacgaataatgcatatatcataccatattacagctg |
323 |
Q |
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| T |
15700131 |
ccagtaacattccatgacggtgtgatggaaacatttccaaagaaattcttgttagagtaacggattatgcatacatcataaaatataacagctg |
15700224 |
T |
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