View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_low_13 (Length: 375)
Name: NF19993_low_13
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 367
Target Start/End: Original strand, 1568673 - 1569024
Alignment:
| Q |
16 |
aaaatgtgtatttttaaattaagaatcacataaaaaagtatgcacattatattgtccaaacaaaatgagagtgaaagccaaaggaaaaacgcaactaact |
115 |
Q |
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| T |
1568673 |
aaaatatgtatttttaaattaagaatcacataaaaaagtatgcacattatattgtccaaacaaaatgagagtgaaagccaaaggaaaaacgcaactaact |
1568772 |
T |
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| Q |
116 |
cctagagatcaccttaaaagcatgtcatatagtctcttgtcctaatttaacatcaaccttaagtcatctaaacggagaacacacaaccaggtgatatcag |
215 |
Q |
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| T |
1568773 |
cctagagatcaccttcaaagcatgtcatatagtctcttgtcctaatttaacatcaaccttaagtcatctaaacggagaacacacaaccaggtgatatcag |
1568872 |
T |
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| Q |
216 |
agatatatatattatagtaaacatgaaatactaataaacaaaatttacttgctggtctttttcagtaacaaaagaaagaacaacggaaagaaacgtgtca |
315 |
Q |
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| T |
1568873 |
agatatatatattatagtaaacatgaaatactaataaacaaaatttacttgctggtctttttcagtaacaaaagaaagaacaacggaaagaaacgtgcca |
1568972 |
T |
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| Q |
316 |
cagtacttcatagtaaatcacctaccagattaaattactatgtccttcatct |
367 |
Q |
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| T |
1568973 |
cagtacttcatagtaaatcacctaccagattaaattactatgtccttcatct |
1569024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 238 - 367
Target Start/End: Original strand, 1561837 - 1561971
Alignment:
| Q |
238 |
atgaaatactaataaacaaaatttacttgctggtctttttcagtaacaaaagaa----------agaacaacggaaagaaacgtgtcacagtacttcata |
327 |
Q |
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| T |
1561837 |
atgaaatactaataaacaaaatttacttgctggtctttttcaggaacaaaagaaagtcgtctctagaacaaccgaaagaaacgtgcc-----acttcata |
1561931 |
T |
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| Q |
328 |
gtaaatcacctaccagattaaattactatgtccttcatct |
367 |
Q |
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| T |
1561932 |
ggaaatgacctaccagattaaattactatgtccttcatct |
1561971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 238 - 367
Target Start/End: Original strand, 2092292 - 2092426
Alignment:
| Q |
238 |
atgaaatactaataaacaaaatttacttgctggtctttttcagtaacaaaagaa----------agaacaacggaaagaaacgtgtcacagtacttcata |
327 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| |||||||| ||| |||||||| |
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| T |
2092292 |
atgaaatactaataaacaaaatttacttggtggtctttttcagaaacaaaagaaagtcttctctagaacaaatgaaagaaagacgtc-----acttcata |
2092386 |
T |
|
| Q |
328 |
gtaaatcacctaccagattaaattactatgtccttcatct |
367 |
Q |
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| T |
2092387 |
gtaaatcaccaaccagattaaattactatgtccttcatct |
2092426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 1560995 - 1561028
Alignment:
| Q |
190 |
gagaacacacaaccaggtgatatcagagatatat |
223 |
Q |
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| T |
1560995 |
gagaacacacaaccagctgatatcagagatatat |
1561028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 2091464 - 2091496
Alignment:
| Q |
191 |
agaacacacaaccaggtgatatcagagatatat |
223 |
Q |
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| T |
2091464 |
agaacacacaaccagctgatatcagagatatat |
2091496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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