View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_low_15 (Length: 361)
Name: NF19993_low_15
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 29092083 - 29092397
Alignment:
| Q |
7 |
tccaagaatatgccaaccttctttctattccacaattttcaagaaagcttgtccaagagcttatagctatgcatttgatgatggaaccagcactttcact |
106 |
Q |
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| T |
29092083 |
tccaacaacatgccaaccttctttctattccacaattttcaagaaagcttgtccaagagcttatagctatgcatttgatgatggaaccagcactttcact |
29092182 |
T |
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| Q |
107 |
tgcaaggcttatgaatatgacattgtgttctgtcctaccagcaacaagtaatttgctttatacccctcaaatactattatgacttgcaaacaaaacatat |
206 |
Q |
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| T |
29092183 |
tgcaaggcttatgaatatgacattgtgttctgtcctaccagcaacaagtaaattgctttct--ccctcaaatattattatgacttgcaaagaaaacatat |
29092280 |
T |
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| Q |
207 |
gaaacacacacttctgagattagatgtgtcctcaggtcggacaaatatcgatgtctgatgaacgtacaaaatgtacgatgtgtgttgaataactcagaca |
306 |
Q |
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| T |
29092281 |
aaaacacacacttctgagattagatgtgtcctcaggtcggacaaatatcgatgtccgatgaacgtacaaaacatacgatgtgtgttgaataactcagaca |
29092380 |
T |
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| Q |
307 |
agtgtcccaataaacac |
323 |
Q |
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| T |
29092381 |
agtgtcccaataaacac |
29092397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 13391142 - 13391190
Alignment:
| Q |
65 |
gcttatagctatgcatttgatgatggaaccagcactttcacttgcaagg |
113 |
Q |
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| T |
13391142 |
gcttatagctatgcttatgatgatgaaaccagcactttcgcttgcaagg |
13391190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 31945052 - 31945000
Alignment:
| Q |
56 |
tgtccaagagcttatagctatgcatttgatgatggaaccagcactttcacttg |
108 |
Q |
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| T |
31945052 |
tgtccacgcgcttatagctatgcttatgatgatggaactagcaccttcacttg |
31945000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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