View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_low_18 (Length: 313)
Name: NF19993_low_18
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 51268731 - 51268872
Alignment:
| Q |
17 |
attgctccacctccaccaccggagaaacgttcagagaccaccggcgaccaccaacaccatgttgcatggactagtatccctcaagagagatgggaaggag |
116 |
Q |
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| T |
51268731 |
attgctccacctccaccaccggagaaacgttcagagaccaccggcgaccaccaacaccatgttgcatggactagtatccctcaagagagatgggaaggag |
51268830 |
T |
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| Q |
117 |
aactgcttgttcaaggacatattccactctggctggtgagtg |
158 |
Q |
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| T |
51268831 |
aactgcttgttcaaggacatattccactctggctggtgagtg |
51268872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 183 - 298
Target Start/End: Original strand, 51268889 - 51269004
Alignment:
| Q |
183 |
cgtaacactcatagtttttatcaaataatgccattttatatttttattgccgaaaaaatacattattaatttcaacatgaaaactatacgttaaaaagaa |
282 |
Q |
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| T |
51268889 |
cgtaacactcatagtttttatcaaataatgccattttatatttttattgccgaaaaaatacattattaatttcaacatgaaaactatacgttaaaaagaa |
51268988 |
T |
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| Q |
283 |
aaagaacatcgtttat |
298 |
Q |
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| T |
51268989 |
aaagaacatcgtttat |
51269004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 23306773 - 23306914
Alignment:
| Q |
17 |
attgctccacctccaccaccggagaaacgttcagagaccaccggcgaccaccaacaccatgttgcatggactagtatccctcaagagagatgggaaggag |
116 |
Q |
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| T |
23306773 |
attgttccacctcaaccaccggagaaacgttcagagaccaccggtgaccaccaacaccatgttgcatggactagtatccatcaagagagatgggaaggag |
23306872 |
T |
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| Q |
117 |
aactgcttgttcaaggacatattccactctggctggtgagtg |
158 |
Q |
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| T |
23306873 |
aactgcttgttcaaggacatattccactctggctggtgagtg |
23306914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 23306948 - 23306994
Alignment:
| Q |
193 |
atagtttttatcaaataatgcca-ttttatatttttattgccgaaaa |
238 |
Q |
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|||||||| ||||||||| |||| ||||||||||||||||||||||| |
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| T |
23306948 |
atagttttaatcaaataaagccaattttatatttttattgccgaaaa |
23306994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 23306990 - 23307027
Alignment:
| Q |
261 |
gaaaactatacgttaaaaagaaaaagaacatcgtttat |
298 |
Q |
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| T |
23306990 |
gaaaactataaattaaaaagaaaaagaacatcgtttat |
23307027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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