View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19993_low_22 (Length: 281)

Name: NF19993_low_22
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19993_low_22
NF19993_low_22
[»] chr1 (42 HSPs)
chr1 (18-169)||(37556429-37556580)
chr1 (176-280)||(37556184-37556288)
chr1 (186-272)||(37555810-37555896)
chr1 (204-281)||(34364579-34364656)
chr1 (208-280)||(26661535-26661607)
chr1 (204-280)||(45493983-45494059)
chr1 (205-280)||(9955982-9956057)
chr1 (207-280)||(26661910-26661983)
chr1 (204-261)||(41157083-41157140)
chr1 (204-280)||(3537608-3537684)
chr1 (204-280)||(32168707-32168783)
chr1 (204-280)||(41157448-41157524)
chr1 (204-280)||(41759556-41759632)
chr1 (186-280)||(44290814-44290910)
chr1 (186-280)||(44290448-44290543)
chr1 (206-280)||(5319976-5320050)
chr1 (204-270)||(11977363-11977429)
chr1 (204-270)||(31767170-31767236)
chr1 (210-280)||(38804370-38804440)
chr1 (204-280)||(41142445-41142522)
chr1 (186-280)||(17294650-17294746)
chr1 (204-270)||(34649521-34649587)
chr1 (204-270)||(40082489-40082555)
chr1 (204-270)||(48588497-48588563)
chr1 (204-280)||(34364998-34365074)
chr1 (188-270)||(11977027-11977110)
chr1 (204-280)||(3550793-3550866)
chr1 (204-270)||(14318950-14319016)
chr1 (199-261)||(39066204-39066266)
chr1 (207-261)||(45084468-45084522)
chr1 (204-261)||(24600323-24600380)
chr1 (205-270)||(45839714-45839779)
chr1 (204-280)||(3875340-3875416)
chr1 (208-280)||(29798272-29798344)
chr1 (204-280)||(47380176-47380252)
chr1 (204-254)||(4266807-4266855)
chr1 (218-261)||(22793371-22793414)
chr1 (234-268)||(9956212-9956246)
chr1 (206-271)||(41184419-41184487)
chr1 (204-261)||(22077119-22077176)
chr1 (204-261)||(50052033-50052089)
chr1 (208-272)||(22077508-22077572)
[»] chr7 (39 HSPs)
chr7 (186-280)||(45754788-45754882)
chr7 (204-280)||(30244343-30244419)
chr7 (204-280)||(1085625-1085701)
chr7 (204-280)||(34218043-34218119)
chr7 (204-280)||(45433314-45433390)
chr7 (192-272)||(45755008-45755088)
chr7 (186-280)||(30032640-30032735)
chr7 (204-261)||(37167873-37167930)
chr7 (204-280)||(7517653-7517729)
chr7 (204-280)||(37533373-37533449)
chr7 (204-280)||(40094783-40094859)
chr7 (205-280)||(19122804-19122879)
chr7 (187-280)||(23368-23462)
chr7 (204-270)||(47129452-47129518)
chr7 (216-261)||(24838722-24838767)
chr7 (204-257)||(28300577-28300630)
chr7 (205-270)||(45434719-45434784)
chr7 (224-280)||(7554098-7554154)
chr7 (204-280)||(22567048-22567124)
chr7 (204-280)||(28300262-28300338)
chr7 (204-280)||(30245150-30245222)
chr7 (204-280)||(30253565-30253637)
chr7 (206-280)||(11845264-11845338)
chr7 (204-261)||(9901735-9901792)
chr7 (204-261)||(37532760-37532817)
chr7 (204-280)||(6054633-6054709)
chr7 (204-252)||(30244453-30244501)
chr7 (204-252)||(30253671-30253719)
chr7 (204-280)||(36939742-36939818)
chr7 (205-280)||(8128451-8128526)
chr7 (236-280)||(23569043-23569087)
chr7 (220-280)||(24177508-24177568)
chr7 (204-280)||(29157638-29157714)
chr7 (204-252)||(30245256-30245304)
chr7 (204-280)||(37533020-37533095)
chr7 (206-270)||(41854717-41854781)
chr7 (206-261)||(40094424-40094479)
chr7 (187-280)||(20599387-20599483)
chr7 (204-261)||(118308-118367)
[»] chr2 (38 HSPs)
chr2 (186-280)||(23346309-23346404)
chr2 (204-280)||(6422183-6422259)
chr2 (204-280)||(36178614-36178690)
chr2 (176-280)||(962671-962776)
chr2 (204-280)||(5543007-5543083)
chr2 (204-280)||(15511504-15511580)
chr2 (186-280)||(5542615-5542710)
chr2 (186-280)||(37105997-37106092)
chr2 (186-280)||(42514722-42514817)
chr2 (206-280)||(36178182-36178256)
chr2 (204-280)||(3672774-3672850)
chr2 (186-261)||(6421477-6421553)
chr2 (204-280)||(14745676-14745752)
chr2 (204-280)||(15880336-15880412)
chr2 (171-262)||(29676620-29676712)
chr2 (186-280)||(6421804-6421899)
chr2 (186-280)||(36005870-36005965)
chr2 (204-271)||(40733964-40734031)
chr2 (204-261)||(3673160-3673217)
chr2 (204-261)||(6713069-6713126)
chr2 (204-277)||(7598677-7598750)
chr2 (204-261)||(40733609-40733666)
chr2 (204-280)||(35580733-35580809)
chr2 (204-280)||(37106261-37106337)
chr2 (204-280)||(40679638-40679714)
chr2 (205-280)||(7598301-7598376)
chr2 (206-261)||(40163383-40163438)
chr2 (206-280)||(33731721-33731795)
chr2 (205-254)||(1769991-1770040)
chr2 (204-261)||(6421718-6421775)
chr2 (204-280)||(41283484-41283560)
chr2 (206-270)||(38796629-38796695)
chr2 (209-274)||(5367534-5367599)
chr2 (204-280)||(14745302-14745379)
chr2 (208-261)||(36784273-36784326)
chr2 (204-280)||(37632606-37632682)
chr2 (204-280)||(29676981-29677057)
chr2 (205-261)||(31899112-31899168)
[»] chr4 (55 HSPs)
chr4 (204-280)||(25483409-25483485)
chr4 (204-281)||(39792867-39792944)
chr4 (204-280)||(36629310-36629386)
chr4 (204-280)||(54017602-54017678)
chr4 (186-280)||(39404091-39404186)
chr4 (176-276)||(54342986-54343087)
chr4 (204-280)||(10245992-10246068)
chr4 (204-280)||(23817688-23817764)
chr4 (204-280)||(32941130-32941206)
chr4 (204-280)||(41370430-41370506)
chr4 (204-280)||(44620426-44620502)
chr4 (204-280)||(50630762-50630838)
chr4 (205-280)||(39404471-39404546)
chr4 (186-262)||(43174232-43174309)
chr4 (204-280)||(1731654-1731730)
chr4 (204-280)||(3340880-3340956)
chr4 (204-280)||(20826290-20826366)
chr4 (204-268)||(22028376-22028440)
chr4 (204-280)||(49076838-49076914)
chr4 (199-270)||(54108620-54108691)
chr4 (205-280)||(54108986-54109060)
chr4 (185-270)||(16889523-16889609)
chr4 (204-261)||(50002518-50002575)
chr4 (205-261)||(50459813-50459869)
chr4 (205-280)||(52884768-52884844)
chr4 (204-280)||(55933131-55933207)
chr4 (205-280)||(18932757-18932832)
chr4 (207-270)||(19504779-19504842)
chr4 (205-280)||(36572092-36572167)
chr4 (207-261)||(4390111-4390165)
chr4 (204-261)||(18879898-18879955)
chr4 (204-261)||(36608668-36608725)
chr4 (204-261)||(44621094-44621151)
chr4 (204-261)||(45489339-45489396)
chr4 (212-280)||(15841383-15841451)
chr4 (204-280)||(54936269-54936344)
chr4 (218-261)||(40067136-40067179)
chr4 (204-275)||(44620737-44620808)
chr4 (204-270)||(3700440-3700506)
chr4 (224-261)||(45496897-45496934)
chr4 (212-280)||(4955332-4955400)
chr4 (199-243)||(19895406-19895450)
chr4 (204-272)||(20825917-20825985)
chr4 (204-280)||(22183271-22183347)
chr4 (212-280)||(34646664-34646732)
chr4 (204-260)||(43827532-43827588)
chr4 (204-280)||(49302979-49303055)
chr4 (218-261)||(16888837-16888880)
chr4 (204-270)||(22027968-22028034)
chr4 (204-270)||(41370741-41370807)
chr4 (203-261)||(45489720-45489778)
chr4 (204-261)||(3244458-3244515)
chr4 (221-270)||(23556890-23556939)
chr4 (205-261)||(11348272-11348327)
chr4 (204-240)||(23817462-23817498)
[»] chr3 (41 HSPs)
chr3 (204-280)||(39934964-39935040)
chr3 (204-280)||(32589776-32589852)
chr3 (204-280)||(22303964-22304040)
chr3 (204-280)||(37990648-37990724)
chr3 (204-280)||(37990986-37991062)
chr3 (205-280)||(32462910-32462985)
chr3 (204-270)||(54018207-54018273)
chr3 (208-277)||(31190085-31190154)
chr3 (204-280)||(22304642-22304718)
chr3 (204-280)||(41359774-41359850)
chr3 (204-280)||(42342099-42342175)
chr3 (204-280)||(43346800-43346876)
chr3 (206-280)||(52634748-52634822)
chr3 (204-270)||(54017825-54017891)
chr3 (204-261)||(15772946-15773003)
chr3 (204-270)||(15773275-15773343)
chr3 (204-261)||(42342397-42342454)
chr3 (204-261)||(50612456-50612513)
chr3 (204-280)||(3135463-3135539)
chr3 (204-280)||(12114571-12114647)
chr3 (204-280)||(45395662-45395738)
chr3 (204-279)||(41359500-41359575)
chr3 (206-280)||(22303670-22303744)
chr3 (204-280)||(21832354-21832428)
chr3 (204-261)||(25739434-25739491)
chr3 (204-280)||(29644911-29644987)
chr3 (204-280)||(35946595-35946671)
chr3 (204-259)||(53577458-53577513)
chr3 (204-258)||(25755489-25755543)
chr3 (204-280)||(29644590-29644666)
chr3 (204-280)||(33803261-33803337)
chr3 (206-270)||(39914335-39914399)
chr3 (204-280)||(54017557-54017633)
chr3 (204-243)||(22304303-22304342)
chr3 (204-280)||(33175668-33175746)
chr3 (205-279)||(53117985-53118059)
chr3 (204-249)||(8328374-8328419)
chr3 (225-270)||(39336000-39336045)
chr3 (221-261)||(3135099-3135139)
chr3 (205-261)||(11662044-11662099)
chr3 (204-280)||(39389143-39389219)
[»] scaffold0734 (2 HSPs)
scaffold0734 (201-261)||(5489-5549)
scaffold0734 (199-261)||(5874-5936)
[»] chr8 (49 HSPs)
chr8 (204-280)||(30441158-30441234)
chr8 (204-280)||(34834949-34835025)
chr8 (204-280)||(3038299-3038375)
chr8 (204-280)||(3669760-3669836)
chr8 (204-280)||(5915940-5916016)
chr8 (186-280)||(40518144-40518239)
chr8 (204-278)||(40579278-40579352)
chr8 (204-261)||(3670152-3670209)
chr8 (204-261)||(45122716-45122773)
chr8 (186-261)||(6876852-6876928)
chr8 (206-280)||(34835282-34835356)
chr8 (206-280)||(34835548-34835622)
chr8 (206-280)||(34835814-34835888)
chr8 (204-261)||(1014254-1014311)
chr8 (204-261)||(40518674-40518731)
chr8 (204-261)||(41129080-41129137)
chr8 (204-280)||(5420724-5420800)
chr8 (204-280)||(9483196-9483272)
chr8 (204-280)||(30359344-30359420)
chr8 (205-261)||(45122067-45122123)
chr8 (205-280)||(32640542-32640617)
chr8 (204-270)||(6651577-6651643)
chr8 (204-270)||(8919153-8919219)
chr8 (218-280)||(9609158-9609220)
chr8 (218-280)||(20870596-20870658)
chr8 (218-280)||(33113390-33113452)
chr8 (204-257)||(25561824-25561877)
chr8 (204-261)||(37544499-37544556)
chr8 (204-280)||(1013880-1013956)
chr8 (204-280)||(9482613-9482689)
chr8 (204-280)||(9608818-9608894)
chr8 (204-280)||(30359682-30359758)
chr8 (204-280)||(45121665-45121741)
chr8 (204-280)||(45121919-45121995)
chr8 (205-280)||(147893-147968)
chr8 (218-280)||(70297-70359)
chr8 (204-270)||(6731978-6732044)
chr8 (204-261)||(8918773-8918830)
chr8 (187-259)||(43274626-43274699)
chr8 (204-280)||(147524-147600)
chr8 (204-280)||(1513924-1514000)
chr8 (204-280)||(9507855-9507931)
chr8 (211-259)||(41972255-41972303)
chr8 (186-242)||(3037959-3038016)
chr8 (235-280)||(4154321-4154366)
chr8 (204-261)||(12283964-12284021)
chr8 (204-261)||(40579515-40579572)
chr8 (221-261)||(16524457-16524497)
chr8 (205-261)||(18372004-18372060)
[»] chr6 (32 HSPs)
chr6 (204-280)||(2578452-2578528)
chr6 (204-280)||(3409733-3409809)
chr6 (204-280)||(2579881-2579957)
chr6 (204-280)||(16107751-16107827)
chr6 (204-280)||(29518576-29518652)
chr6 (204-280)||(29518993-29519069)
chr6 (204-280)||(32741252-32741328)
chr6 (205-280)||(3409332-3409407)
chr6 (186-280)||(16454648-16454743)
chr6 (186-280)||(16454980-16455075)
chr6 (204-280)||(2377827-2377903)
chr6 (204-280)||(2843628-2843704)
chr6 (204-280)||(1846821-1846897)
chr6 (204-280)||(2378199-2378275)
chr6 (204-280)||(2579501-2579577)
chr6 (204-280)||(3058299-3058375)
chr6 (204-280)||(10074372-10074448)
chr6 (205-260)||(2579119-2579174)
chr6 (204-280)||(3415531-3415609)
chr6 (206-261)||(5832038-5832093)
chr6 (205-280)||(26544122-26544197)
chr6 (204-261)||(2578844-2578901)
chr6 (207-280)||(12085046-12085119)
chr6 (204-280)||(10911639-10911715)
chr6 (205-261)||(12071701-12071757)
chr6 (204-280)||(35210277-35210353)
chr6 (204-261)||(10073625-10073682)
chr6 (204-280)||(1127433-1127509)
chr6 (210-270)||(1950200-1950260)
chr6 (204-261)||(14748351-14748404)
chr6 (204-270)||(6999805-6999871)
chr6 (204-249)||(3409405-3409450)
[»] chr5 (37 HSPs)
chr5 (204-280)||(6500523-6500599)
chr5 (204-280)||(32487466-32487542)
chr5 (204-280)||(40296324-40296400)
chr5 (186-280)||(15370172-15370267)
chr5 (204-261)||(36492226-36492283)
chr5 (204-280)||(624269-624345)
chr5 (204-256)||(3295354-3295406)
chr5 (204-280)||(15370475-15370551)
chr5 (204-280)||(18603129-18603205)
chr5 (204-280)||(34753034-34753110)
chr5 (210-280)||(41170707-41170777)
chr5 (186-270)||(25328018-25328103)
chr5 (204-280)||(3295024-3295100)
chr5 (204-280)||(11416986-11417062)
chr5 (204-280)||(27502045-27502121)
chr5 (187-261)||(38427311-38427386)
chr5 (209-275)||(301029-301095)
chr5 (199-261)||(13415764-13415826)
chr5 (186-270)||(42405588-42405671)
chr5 (204-261)||(26900026-26900083)
chr5 (204-261)||(41632874-41632931)
chr5 (204-280)||(6500895-6500971)
chr5 (204-280)||(26074685-26074761)
chr5 (171-273)||(623898-624001)
chr5 (204-278)||(26074155-26074229)
chr5 (204-281)||(36568578-36568653)
chr5 (204-261)||(12662661-12662718)
chr5 (204-280)||(26075170-26075247)
chr5 (185-261)||(29549244-29549321)
chr5 (204-280)||(299562-299638)
chr5 (204-280)||(1028526-1028602)
chr5 (204-280)||(24489215-24489291)
chr5 (218-261)||(795255-795298)
chr5 (233-280)||(9498692-9498739)
chr5 (218-280)||(9498346-9498408)
chr5 (204-270)||(35167847-35167913)
chr5 (204-261)||(38427639-38427696)
[»] scaffold0702 (2 HSPs)
scaffold0702 (204-280)||(523-599)
scaffold0702 (204-256)||(156-208)
[»] scaffold0391 (1 HSPs)
scaffold0391 (204-280)||(1115-1191)
[»] scaffold0027 (1 HSPs)
scaffold0027 (204-280)||(47433-47509)
[»] scaffold0078 (1 HSPs)
scaffold0078 (204-261)||(5074-5131)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 9e-76; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 37556580 - 37556429
Alignment:
Q  18 atgttgaactcaacacaaatgaaaagtcaatagactctcttaagactaaaacctaactgcaagtattcttctttctaaattataacacattctactattc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37556580 atgttgaactcaacacaaatgaaaagtcaatagactctcttaagactaaaacctaactgcaagtattcttctttctaaattgtaacacattctactattc 37556481  T
Q  118 tagtgaccttctttataccaaagatttgaagaggaacaaattacaacacatt 169  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37556480 tagtgaccttctttataccaaagatttaaagaggaacaaattacaacacatt 37556429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 176 - 280
Target Start/End: Complemental strand, 37556288 - 37556184
Alignment:
Q  176 ttggatcactggggagctcgagcgaccgccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgg 275  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||    
T  37556288 ttgggtcactggggagctcgagcgaccgccacatcgaggcttgaacaaccacacaagcaagagagacaccacactcttacccaaaaccttaaggctatgg 37556189  T
Q  276 gttta 280  Q
    |||||    
T  37556188 gttta 37556184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 186 - 272
Target Start/End: Complemental strand, 37555896 - 37555810
Alignment:
Q  186 ggggagctcgagcgaccgccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggcta 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||    
T  37555896 ggggagctcgagcgaccgccacatcgaggcttgaacaaccacacaagcaagagagacaccacactcttacccaaaaccttaaggcta 37555810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 281
Target Start/End: Complemental strand, 34364656 - 34364579
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggtttac 281  Q
    ||||||||||||| || ||||| || |||| |||||||||||||||||||||||||||  ||||||||||||||||||    
T  34364656 ccacatcgaggctagagcaaccgcataagcgagagagacatcacactcttacccaaaaccttaaggctatgggtttac 34364579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 26661535 - 26661607
Alignment:
Q  208 atcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  26661535 atcgaggcttgaacaaccacacaagcgagagagacaccacactcttacccaaaaccttaaggcaatgagttta 26661607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 45493983 - 45494059
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||||  ||||||| |||||||||    
T  45493983 ccacatcgaggcttgaacaaccacataaggaagagagacaccacactcttatccaaaactttaaggcaatgggttta 45494059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 9956057 - 9955982
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||| || ||||| |||||||||||||||||||||||||||||||||||  ||||||| || ||||||    
T  9956057 cacatcgaggctagagcaaccgcacaagcaagagagacatcacactcttacccaaaaccttaaggcaattggttta 9955982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 280
Target Start/End: Original strand, 26661910 - 26661983
Alignment:
Q  207 catcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||  ||||||| || ||||||    
T  26661910 catcaaggattgaacaaccacacaagcaagagagacaccacactcttacccaaaaccttaaggcaatcggttta 26661983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 41157140 - 41157083
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||    
T  41157140 ccacatcgaggctagaacaaccacacaagcaatagagacaccacactcttacccaaaa 41157083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 3537608 - 3537684
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||||||||  |||||||||||||||||  ||||| | |||||||||    
T  3537608 ccacatcgaggctagaacaaccgcacaagcaagagagacgccacactcttacccaaaaccttaagccaatgggttta 3537684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 32168707 - 32168783
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||||||||  |||||||||||||||||  | ||||| |||||||||    
T  32168707 ccacatcgaggctagaacaaccgcacaagcaagagagacgccacactcttacccaaaacctcaaggcaatgggttta 32168783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 41157524 - 41157448
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||  | ||||| |||||||||    
T  41157524 ccacatcgaggctagaacaaccacacaagcaagacagacaccacactcttactcaaaacctaaaggcaatgggttta 41157448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 41759632 - 41759556
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||  ||||||| |||| ||||    
T  41759632 ccacatcaaggctagaacaaccacataagcaagagagacaccacactcttacccaaaaccttaaggcaatggattta 41759556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 280
Target Start/End: Original strand, 44290814 - 44290910
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactc-ttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| | ||||| ||||||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||  ||||||| |||||||||    
T  44290814 ggggagctcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagatacaccacactctttacccaaaaccttaaggcaatgggttta 44290910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 280
Target Start/End: Original strand, 44290448 - 44290543
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| | ||||| ||||||||||||| ||||||||  |||||||||| ||||| || ||||||||||||||  ||||||| |||||||||    
T  44290448 ggggagctcgggggaccgtccacatcgaggctagaacaaccgtacaagcaagaaagacaccatactcttacccaaaaccttaaggcaatgggttta 44290543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 5319976 - 5320050
Alignment:
Q  206 acatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||| |||||| ||||||||||| ||||||||||||||  ||||||||||||||||  ||||||||||| |||||    
T  5319976 acattgaggctagaacaaccacataagcaagagagacactacactcttacccaaaaccttaaggctatgagttta 5320050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 11977429 - 11977363
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||  |||||||    
T  11977429 ccacatcgaggctagaacaaccgcacttgcaagagagacatcacactcttacccaaaaccttaaggc 11977363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 31767170 - 31767236
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    |||||||||| || |||||||||||||||||||| |||| ||||||||||||||||||  |||||||    
T  31767170 ccacatcgagtctagaacaaccacacaagcaagatagacgtcacactcttacccaaaaccttaaggc 31767236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 38804370 - 38804440
Alignment:
Q  210 cgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||| |||||||| |||||||||||||||||  ||||||||||||||||  |||||| ||||||||||    
T  38804370 cgaggctagaacaaccgcacaagcaagagagacactacactcttacccaaaaccttaaggttatgggttta 38804440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 41142522 - 41142445
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactc-ttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||||||||||||||||||||  ||||||| ||||| ||||  ||||||| |||||||||    
T  41142522 ccacatcgaggctagaacaaccacacaagcaagagagacgccacactctttaccaaaaaccttaaggcaatgggttta 41142445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 17294746 - 17294650
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaacca-cacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| ||||||| ||||||||||||| || |||||  || |||| ||||||||| |||||||||||||||||  ||||||| |||||||||    
T  17294746 ggggagctcgggcgaccgtccacatcgaggctagagcaacctgcataagcgagagagacaccacactcttacccaaaaccttaaggcaatgggttta 17294650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 34649587 - 34649521
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||||||||| |||||||||||| ||||||||||||  | |||||||||||||||  |||||||    
T  34649587 ccacatcgaggctagaacaaccacactagcaagagagacgcctcactcttacccaaaaccttaaggc 34649521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 40082555 - 40082489
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||||||||| |||||| | ||||||||||||||| | |||||||||||||||||  |||||||    
T  40082555 ccacatcgaggctagaacaaacgcacaagcaagagagataccacactcttacccaaaaccttaaggc 40082489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 48588497 - 48588563
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||||||||| |||||||| |||||| |||||||||| | |||||||||||||||  |||||||    
T  48588497 ccacatcgaggctagaacaaccgcacaagtaagagagacaccgcactcttacccaaaaccttaaggc 48588563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 34365074 - 34364998
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||| | || ||||  || |||| ||||||||| |||||||||||||||||  |||||||||||||||||    
T  34365074 ccacatcgaggttagagcaactgcataagcgagagagacaccacactcttacccaaaaccttaaggctatgggttta 34364998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 11977110 - 11977027
Alignment:
Q  188 ggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    |||||||| | ||||| ||||||||||||| |||| ||| |||  |||||||||||| |||||||||||||||||  |||||||    
T  11977110 ggagctcgggggaccgtccacatcgaggctagaactaccgcacttgcaagagagacaccacactcttacccaaaaccttaaggc 11977027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 3550866 - 3550793
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| ||||||||  |   |||||||||||| |||||||||||||||||  ||||||| |||||||||    
T  3550866 ccacatcgaggctagaacaaccgta---gcaagagagacaccacactcttacccaaaactttaaggcaatgggttta 3550793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 14319016 - 14318950
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    |||||| |||||| |||||||| |||||  |||||||||| |||||||||||||||||  |||||||    
T  14319016 ccacattgaggctagaacaaccgcacaaataagagagacaccacactcttacccaaaaccttaaggc 14318950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 39066204 - 39066266
Alignment:
Q  199 gaccgccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||| |||||| ||||| ||||||||||| ||| |||||||||| |||||||||| ||||||    
T  39066204 gaccgtcacatcaaggctagaacaaccacataagtaagagagacaccacactcttatccaaaa 39066266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 45084522 - 45084468
Alignment:
Q  207 catcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||||| | |||||||| ||||||||||||||||| ||| |||||||||||||    
T  45084522 catcgaggttagaacaaccgcacaagcaagagagacaccactctcttacccaaaa 45084468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 24600323 - 24600380
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| ||||||||| || ||| ||||||||| ||||||||||| |||||    
T  24600323 ccacatcgaggctagaacaaccatactagcgagagagacaccacactcttacacaaaa 24600380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 45839779 - 45839714
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    |||||||||||  |||||| | ||||||||||||||||| |||| ||||||||||||  |||||||    
T  45839779 cacatcgaggccagaacaatcccacaagcaagagagacaccacaatcttacccaaaaccttaaggc 45839714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 3875340 - 3875416
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||||||| ||  ||||||||  |||| ||||||| ||||  ||||||| |||||||||    
T  3875340 ccacatcgaggctagaacaaccacactagtgagagagactccacattcttacctaaaaccttaaggcaatgggttta 3875416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 29798344 - 29798272
Alignment:
Q  208 atcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||| | ||||||||||||  |||||||||||| |||||||||| |||| |  ||||||| |||||||||    
T  29798344 atcgaggttagaacaaccacacttgcaagagagacaccacactcttatccaagaccttaaggcaatgggttta 29798272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 47380176 - 47380252
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||| |||||||| |||||| |||||  |||||||  ||||||||||||||||||  ||||||| ||| |||||    
T  47380176 ccacatctaggcttgagcaaccagacaagtgagagagatgtcacactcttacccaaaactttaaggcaatgagttta 47380252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 4266807 - 4266855
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactctta 254  Q
    ||||||||||||| |||||||||||  || |||||||||||||||||||||    
T  4266807 ccacatcgaggctagaacaaccaca--agtaagagagacatcacactctta 4266855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 22793414 - 22793371
Alignment:
Q  218 gaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||||| ||||||||| |||||||||||| |||||    
T  22793414 gaacaaccacacaagtaagagagacgtcacactcttactcaaaa 22793371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 9956212 - 9956246
Alignment:
Q  234 aagagagacatcacactcttacccaaaagattaag 268  Q
    |||||||||||||||||||||||||||| ||||||    
T  9956212 aagagagacatcacactcttacccaaaacattaag 9956246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 41184419 - 41184487
Alignment:
Q  206 acatcgaggcttgaacaaccacacaagcaagagagac---atcacactcttacccaaaagattaaggct 271  Q
    ||||||||||| |||||||| |||||| ||||| |||   |||||||||||||||||||  ||||||||    
T  41184419 acatcgaggctggaacaaccgcacaagtaagagcgacaatatcacactcttacccaaaaccttaaggct 41184487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 22077119 - 22077176
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||||||||||||||||||| || |||  || ||||| ||||||||||| ||||||    
T  22077119 ccacatcgaggcttgaacaaccgcataagtgagggagacgtcacactcttatccaaaa 22077176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 50052033 - 50052089
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||| | ||||||| ||| || ||||||||||| |||||||||||||||||    
T  50052033 ccacatcgaggttagaacaac-acataaacaagagagacaccacactcttacccaaaa 50052089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 22077508 - 22077572
Alignment:
Q  208 atcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggcta 272  Q
    ||||| |||||||||||| || |||  ||||||||  |||||||||||||||||  |||||||||    
T  22077508 atcgatgcttgaacaaccgcataagtgagagagacgccacactcttacccaaaaccttaaggcta 22077572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 45754882 - 45754788
Alignment:
Q  186 ggggagctcgagcgaccgccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||    
T  45754882 ggggagctcgagtgaccgctacatcgaggcttgaacaaccacacaagcaagagagacaccacactcttacccaaaaccttaaggctatgggttta 45754788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 30244419 - 30244343
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||  ||||||| |||||||||    
T  30244419 ccacatcgaggcttgaacaaccacacaagtgagagagacaccacactcttacccaaaaccttaaggcaatgggttta 30244343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 1085625 - 1085701
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| ||||||||||||||| |||||||||  |||||||||||||||||  ||||||| |||||||||    
T  1085625 ccacatcgaggctagaacaaccacacaagtaagagagacgccacactcttacccaaaaccttaaggcaatgggttta 1085701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 34218043 - 34218119
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||  ||||| | |||||||||    
T  34218043 ccacatcgaggcttgaacaaccatacaagcgagagagacaccacactcttacccaaaaccttaagacaatgggttta 34218119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 45433390 - 45433314
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||  ||||||| || ||||||    
T  45433390 ccacatcgaggctagaacaaccccacaagcaagagagacaccacactcttacccaaaatcttaaggcaataggttta 45433314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 45755088 - 45755008
Alignment:
Q  192 ctcgagcgaccgccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggcta 272  Q
    |||||||||||| || ||||||||||||||||||||||||| ||| |||||| |||||| ||||||||||  |||||||||    
T  45755088 ctcgagcgaccgtcatatcgaggcttgaacaaccacacaagtaagggagacaccacacttttacccaaaattttaaggcta 45755008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 30032735 - 30032640
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| | ||||| ||||||||||| | |||||||| |||||||||||||||  ||||||||||||||||||  |||||||||| ||||||    
T  30032735 ggggagctcgggggaccgtccacatcgaggatagaacaaccgcacaagcaagagagatgtcacactcttacccaaaaccttaaggctataggttta 30032640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 37167930 - 37167873
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  37167930 ccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttacccaaaa 37167873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 7517729 - 7517653
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||||||||||  ||| ||||| |||||||||||||||||  ||||||| |||||||||    
T  7517729 ccacatcgaggctagaacaaccacacaagtgagacagacaccacactcttacccaaaaccttaaggcaatgggttta 7517653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 37533373 - 37533449
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||||  ||||||| |||| ||||    
T  37533373 ccacatcgaggctagaacaaccgcacaagcaaaagagacaccacactcttacccaaaaccttaaggcaatggattta 37533449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 40094783 - 40094859
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||||||||  |||||||||||||||||  ||||| | |||||||||    
T  40094783 ccacatcgaggctagaacaacctcacaagcaagagagacgccacactcttacccaaaaccttaagacgatgggttta 40094859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 19122879 - 19122804
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||  ||||||| |||| ||||    
T  19122879 cacatcgagactagaacaaccacacaagcaagatagacaccacactcttacccaaaaccttaaggcaatggattta 19122804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 280
Target Start/End: Original strand, 23368 - 23462
Alignment:
Q  187 gggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||| | ||||| ||| ||||||||| |||||||| |||| |||||||||||| |||||||||||||||||  ||||||| || ||||||    
T  23368 gggagctcgggggaccgtccaaatcgaggctagaacaaccgcacatgcaagagagacaccacactcttacccaaaaccttaaggcaataggttta 23462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 47129518 - 47129452
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||  |||||||    
T  47129518 ccacatcgaggctagatcaaccgcacaagcaagagagacaccacactcttacccaaaaccttaaggc 47129452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 24838722 - 24838767
Alignment:
Q  216 ttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  24838722 ttgaacaaccacacaagcaagagagacgtcacactcttacccaaaa 24838767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 28300577 - 28300630
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttaccc 257  Q
    ||||||||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  28300577 ccacatcgaggctagaataaccacacaagcaagagagacaccacactcttaccc 28300630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 45434784 - 45434719
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    |||||||||||| |||||||  |||||| ||||||||||||||||||||||||||||  |||||||    
T  45434784 cacatcgaggctagaacaactccacaagtaagagagacatcacactcttacccaaaaccttaaggc 45434719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 7554154 - 7554098
Alignment:
Q  224 ccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| ||||||||| |||||||||||||||||  |||||||||||||||||    
T  7554154 ccacacaagcgagagagacaccacactcttacccaaaaccttaaggctatgggttta 7554098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 22567048 - 22567124
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||  |||||||| ||||||||||||||||| |||||||||||| ||||  ||||||| ||| |||||    
T  22567048 ccacatcgaggcccgaacaaccccacaagcaagagagacaccacactcttaccaaaaaccttaaggcaatgagttta 22567124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 28300262 - 28300338
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||  ||||||||||||  |||||||||||  |||||||||||||||||  ||||||| |||||||||    
T  28300262 ccacatcgaggcccgaacaaccacacttgcaagagagacgccacactcttacccaaaatcttaaggcaatgggttta 28300338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 30245222 - 30245150
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||||||||||||||||    ||||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  30245222 ccacatcgaggcttgaacaaccaca----caagagagacaccacactcttacccaaaaccttaaggcaatgagttta 30245150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 30253637 - 30253565
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||||||||||||||||    ||||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  30253637 ccacatcgaggcttgaacaaccaca----caagagagacaccacactcttacccaaaaccttaaggcaatgagttta 30253565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 11845338 - 11845264
Alignment:
Q  206 acatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||| |||||||  ||||||||||||||||| |||||||||| ||||||  ||||||| |||| ||||    
T  11845338 acatcgaggctagaacaactgcacaagcaagagagacaccacactcttatccaaaaccttaaggcaatggattta 11845264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 9901792 - 9901735
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||| ||||||| |||||||| ||| ||||||||||||| |||||||||||||||||    
T  9901792 ccacaccgaggctagaacaaccgcactagcaagagagacaccacactcttacccaaaa 9901735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 37532760 - 37532817
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| |||||||  ||||||| ||||||||| |||||||||||||||||    
T  37532760 ccacatcgaggctagaacaacagcacaagctagagagacaccacactcttacccaaaa 37532817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 6054709 - 6054633
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||| ||||| ||||||||| ||||| | |||||||| |||||||||||||||||  ||||||| ||| |||||    
T  6054709 ccacatcaaggctagaacaaccatacaagtaggagagacaccacactcttacccaaaaccttaaggcaatgtgttta 6054633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 30244501 - 30244453
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactct 252  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  30244501 ccacatcgaggcttgaacaaccacacaagtgagagagacaccacactct 30244453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 30253719 - 30253671
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactct 252  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  30253719 ccacatcgaggcttgaacaaccacacaagtgagagagacaccacactct 30253671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 36939742 - 36939818
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| || |||||||||| ||| |||||| ||||||||||  ||||||| |||| ||||    
T  36939742 ccacatcgaggctagaacaaccgcataagcaagagaaacaccacacttttacccaaaaccttaaggcaatggattta 36939818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 8128451 - 8128526
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||| ||| ||||||||||| |||| |||| |||| |||||||||| ||||||  |||||| ||||||||||    
T  8128451 cacatcgatgctagaacaaccacataagcgagagtgacaccacactcttaaccaaaaccttaaggttatgggttta 8128526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 23569043 - 23569087
Alignment:
Q  236 gagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||||||||||||||||  ||||||| |||||||||    
T  23569043 gagagacatcacactcttacccaaaaccttaaggcaatgggttta 23569087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 24177568 - 24177508
Alignment:
Q  220 acaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||| ||||||||||||||||  |||||||||||| ||||  ||||||| |||||||||    
T  24177568 acaaccgcacaagcaagagagacgccacactcttaccaaaaactttaaggcaatgggttta 24177508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 29157714 - 29157638
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||| || || || |||| |||| ||||||||||||| |||||||||||||||||  ||||||| |||| ||||    
T  29157714 ccacatcaagactagagcaactacacgagcaagagagacaccacactcttacccaaaaccttaaggcaatggattta 29157638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 30245304 - 30245256
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactct 252  Q
    |||||| ||||||||||||||||||||||  ||||||||| ||||||||    
T  30245304 ccacattgaggcttgaacaaccacacaagtgagagagacaccacactct 30245256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 37533020 - 37533095
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||| | |||||| | ||||||||||||||||| |||||| ||||||||||  ||||||| ||| |||||    
T  37533020 ccacatcgaggttagaacaagcgcacaagcaagagagacaccacact-ttacccaaaaccttaaggcaatgagttta 37533095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 41854781 - 41854717
Alignment:
Q  206 acatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    |||| |||||| |||||||| |||||| |||| |||| ||||||||||||||||||  |||||||    
T  41854781 acattgaggctagaacaaccgcacaagtaagaaagacgtcacactcttacccaaaaccttaaggc 41854717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 40094424 - 40094479
Alignment:
Q  206 acatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||| |||| ||||||||||| ||| |||| |||| ||||||||||||||||||    
T  40094424 acatcggggctagaacaaccacataagtaagaaagacgtcacactcttacccaaaa 40094479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 280
Target Start/End: Complemental strand, 20599483 - 20599387
Alignment:
Q  187 gggagctcgagcgaccgc-cacatcgaggcttgaacaaccacacaagcaagagagacatcaca--ctcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||| |||||  |||||| ||| |  |||||||| |||||||||||||||| ||||  |||||||||||||  ||||||| ||| |||||    
T  20599483 gggagctcgagagaccgttcacatcaaggttaaaacaaccatacaagcaagagagacaccacactctcttacccaaaacgttaaggcaatgagttta 20599387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 118308 - 118367
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagag--agacatcacactcttacccaaaa 261  Q
    ||||||| | ||| |||||||||||||||||||||  ||||  |||||||||||||||||    
T  118308 ccacatcaaagctagaacaaccacacaagcaagagatagacgccacactcttacccaaaa 118367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 23346404 - 23346309
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| ||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||||| ||||  |||||||||||||||||    
T  23346404 ggggagctcgggcgaccgtccacatctaggctagaacaaccgcacaagcaagagagacatcacactcttaccgaaaaccttaaggctatgggttta 23346309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 6422259 - 6422183
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||  |||||||||||||||||    
T  6422259 ccacatcgaggctagaacaaccacacaagcaagagagacaccacactcttacctaaaaccttaaggctatgggttta 6422183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 36178614 - 36178690
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||  ||||||| |||||||||    
T  36178614 ccacatagaggctagaacaaccacacaagcaagagagacaccacactcttacccaaaaccttaaggcaatgggttta 36178690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 280
Target Start/End: Complemental strand, 962776 - 962671
Alignment:
Q  176 ttggatcactggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatg 274  Q
    ||||||||  |||||| ||| | ||||| ||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||  ||||| | |||    
T  962776 ttggatcatgggggagttcgggagaccgtccacatcgaggctagaacaaccacacaagcaagagtgacaacacactcttacccaaaaccttaagacaatg 962677  T
Q  275 ggttta 280  Q
    ||||||    
T  962676 ggttta 962671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 5543007 - 5543083
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||  ||||||| || ||||||    
T  5543007 ccacatcgaggcttgaacaaccgcacaagcaatagagacaccacactcttacccaaaatcttaaggcaataggttta 5543083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 15511504 - 15511580
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| || |||||||||||||||||||||||||| |||||||||||||||||  ||||| | |||||||||    
T  15511504 ccacatcgagactagaacaaccacacaagcaagagagacaccacactcttacccaaaatcttaagacaatgggttta 15511580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 280
Target Start/End: Original strand, 5542615 - 5542710
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| | ||||| |||||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||  ||||||| || ||||||    
T  5542615 ggggagctcgggggaccgtccacatcgagacttgaacaaccgcacaagcaagagagacaccacactcttaccaaaaaccttaaggcaataggttta 5542710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 37106092 - 37105997
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| | ||||| ||||||||||||| ||||||||  |||||||||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  37106092 ggggagctcgggggaccgtccacatcgaggctagaacaaccgtacaagcaagagagacaccacactcttacccaaaatcttaaggcaatgagttta 37105997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 42514817 - 42514722
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| | ||||| ||||||||||||| |||||||| |||||| |||||||||  |||||||||||||||||  ||||||| |||||||||    
T  42514817 ggggagctcgggggaccgtccacatcgaggctagaacaaccccacaagtaagagagacgccacactcttacccaaaatcttaaggcgatgggttta 42514722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 36178182 - 36178256
Alignment:
Q  206 acatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||  |||||||||||||||||||||| || |||||||||||||||||  ||||||| |||||||||    
T  36178182 acatcgaggctataacaaccacacaagcaagagaggcaccacactcttacccaaaatcttaaggcaatgggttta 36178256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 3672850 - 3672774
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| || ||||||||||||||  |||||||||| |||||||||||||||||  ||||||| |||||||||    
T  3672850 ccacatcgagactagaacaaccacacaattaagagagacaccacactcttacccaaaatcttaaggcaatgggttta 3672774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 6421553 - 6421477
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||||||| | ||||| |||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||    
T  6421553 ggggagctcgggggaccgtccacatcgagactagaacaaccgcacaagcaagagagacaccacactcttacccaaaa 6421477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 14745676 - 14745752
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| ||||||||||||  |||||||||||  |||||||||||||||||  ||||||| |||||||||    
T  14745676 ccacatcgaggctagaacaaccacacttgcaagagagacgccacactcttacccaaaaccttaaggcaatgggttta 14745752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 15880412 - 15880336
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||||  ||||||| ||||||||||||||||  |||||||||||||||||  ||||||| |||||||||    
T  15880412 ccacatcgaggctaaaacaaccgcacaagcaagagagacgccacactcttacccaaaaccttaaggcaatgggttta 15880336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 29676712 - 29676620
Alignment:
Q  171 cactattggatcactggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaag 262  Q
    |||| |||| ||||||||||| ||  | ||||| ||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  29676712 cactgttgggtcactggggagttccggggaccgtccacatcgaggtttgaataaccccacaagcaagagagacaccacactcttacccaaaag 29676620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 6421899 - 6421804
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| | ||||| ||||||||||||  |||||||||||||||  ||||||||| |||||||||||||||||  ||||||| || ||||||    
T  6421899 ggggagctcgggggaccgtccacatcgaggccagaacaaccacacaagttagagagacaccacactcttacccaaaaccttaaggcaataggttta 6421804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 280
Target Start/End: Original strand, 36005870 - 36005965
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||| ||| | ||||||||||||| |||||||| ||||||||||||||||  |||||| ||||||||||  ||||||| ||| |||||    
T  36005870 ggggagctcgagagactgtccacatcgaggctagaacaaccccacaagcaagagagacgccacacttttacccaaaaccttaaggcaatgagttta 36005965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 40734031 - 40733964
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggct 271  Q
    |||||||||| ||||||||||||||||||| ||| ||||| |||||||||||||||||  ||||||||    
T  40734031 ccacatcgagacttgaacaaccacacaagcgagacagacaccacactcttacccaaaactttaaggct 40733964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 3673217 - 3673160
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| |||||||||||| || ||||||||||||||||||||| ||||||    
T  3673217 ccacatcgaggctagaacaaccacactagtaagagagacatcacactcttagccaaaa 3673160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 6713126 - 6713069
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| |||||| | || ||||||||||||||||||||||||||||||||    
T  6713126 ccacatcgaggctagaacaatcccataagcaagagagacatcacactcttacccaaaa 6713069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 7598750 - 7598677
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggt 277  Q
    ||||||||| |||||||||||||||||||  ||||||||| |||||||||||| ||||  |||||| |||||||    
T  7598750 ccacatcgatgcttgaacaaccacacaagtgagagagacaccacactcttaccaaaaacgttaaggttatgggt 7598677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 40733666 - 40733609
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||||||| ||||||| ||||||||||| ||||||||| |||||||||||||||||    
T  40733666 ccacatcgagacttgaactaccacacaagcgagagagacaccacactcttacccaaaa 40733609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 35580733 - 35580809
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||| ||||||||||  | |||||||||||||||  ||||||| |||||||||    
T  35580733 ccacatcgaggctagaacaaccccacaaacaagagagacgccgcactcttacccaaaaccttaaggcaatgggttta 35580809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 37106337 - 37106261
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||| | ||||||||||||| ||| |||||||||||||||||  ||||||  |||||||||    
T  37106337 ccacatcgaggctagaacaatcgcacaagcaagagaaacaccacactcttacccaaaaccttaaggaaatgggttta 37106261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 40679638 - 40679714
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| || |||||||| |||||| |||||||||  |||||||||||||||||  ||||||| |||||||||    
T  40679638 ccacatcgagactagaacaaccccacaagtaagagagacgccacactcttacccaaaatcttaaggcgatgggttta 40679714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 7598376 - 7598301
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||||||||||| ||||||  ||||||||| || | ||||||||||||  ||||||||||| |||||    
T  7598376 cacatcgaggcttgaacaaccgcacaagtgagagagacaccatattcttacccaaaaccttaaggctatgagttta 7598301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 40163383 - 40163438
Alignment:
Q  206 acatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||| | |||||||||||||||||||||||||| |||||| ||||||||||    
T  40163383 acatcgaggttagaacaaccacacaagcaagagagacaccacacttttacccaaaa 40163438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 33731795 - 33731721
Alignment:
Q  206 acatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||| |||||||| || |||||||||||||| || ||||||||||||||  ||||||| || ||||||    
T  33731795 acatcgaggctagaacaaccgcataagcaagagagacaccatactcttacccaaaaccttaaggcaataggttta 33731721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 1770040 - 1769991
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactctta 254  Q
    |||||||||||| |||||||| ||||||||||||||||| ||||||||||    
T  1770040 cacatcgaggctagaacaacctcacaagcaagagagacaccacactctta 1769991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 6421775 - 6421718
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||  |||||||||||||||  ||||||||| |||||||||||||||||    
T  6421775 ccacatcgaggccggaacaaccacacaagttagagagacaccacactcttacccaaaa 6421718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 41283484 - 41283560
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||| ||||| |||||||||||||| ||||||||||  |||||||||||| ||||  ||||||| ||| |||||    
T  41283484 ccacatcaaggctagaacaaccacacaaacaagagagacgccacactcttacctaaaaccttaaggcaatgagttta 41283560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 38796629 - 38796695
Alignment:
Q  206 acatcgaggcttgaacaaccacacaagcaagagagacatcac--actcttacccaaaagattaaggc 270  Q
    |||||||||||||||||||||||||||||| ||||||  |||  ||||||||||||||  |||||||    
T  38796629 acatcgaggcttgaacaaccacacaagcaatagagacgccacatactcttacccaaaaccttaaggc 38796695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 5367599 - 5367534
Alignment:
Q  209 tcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatg 274  Q
    |||||||| |||||||  ||||||||||||||||  |||||||||||||||||  |||||| ||||    
T  5367599 tcgaggctagaacaactgcacaagcaagagagacgccacactcttacccaaaaccttaaggttatg 5367534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 14745302 - 14745379
Alignment:
Q  204 ccacatcgaggcttgaacaaccac-acaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||||| ||   ||||||||||  |||||||||||||||||  ||||||| |||||||||    
T  14745302 ccacatcgaggctagaacaaccaccacttacaagagagacgccacactcttacccaaaaccttaaggcaatgggttta 14745379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 36784273 - 36784326
Alignment:
Q  208 atcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| ||||||||||||||||||||||  ||||| ||| ||||||    
T  36784273 atcgaggcttgaataaccacacaagcaagagagacacaacacttttatccaaaa 36784326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 37632606 - 37632682
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||| |||||  | |||||| ||| |||||||||||||||||  |||| | ||||||||||    
T  37632606 ccacatcgaggctagaacaatcacacttgtaagagatacaccacactcttacccaaaaccttaaagttatgggttta 37632682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 29677057 - 29676981
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||| | |||||||| |||||  |||||||||| |||||||||||  |||   ||||||| |||||||||    
T  29677057 ccacatcgaggttggaacaaccccacaattaagagagacaccacactcttacttaaagccttaaggcaatgggttta 29676981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 31899112 - 31899168
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||||||| | ||| |||| ||||||||||||||| | | |||||||||||||||    
T  31899112 cacatcgaggttagaagaaccccacaagcaagagagatacctcactcttacccaaaa 31899168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 55)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 25483485 - 25483409
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||  ||||||| |||||||||    
T  25483485 ccacatcgaggctagaacaaccacacaagcaagagagacaccacactcttacccaaaaccttaaggcaatgggttta 25483409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 39792867 - 39792944
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggtttac 281  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||  ||||||| ||| ||||||    
T  39792867 ccacatcgaggctagaacaaccacacaagcaagagagacaccacactcttacccaaaaccttaaggcaatgagtttac 39792944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 36629386 - 36629310
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  36629386 ccacatcgaggctagaacaaccacacaagcaagagagacaccacactcttacccaaaaccttaaggcaatgagttta 36629310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 54017602 - 54017678
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||  ||||||| |||||||||    
T  54017602 ccacatcgaggctagaacaaccacataagcaagagagacatcacactcttacctaaaaccttaaggcaatgggttta 54017678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 39404186 - 39404091
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| | ||||| ||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||  |||| |||||| |||||    
T  39404186 ggggagctcgggggaccgtccacatcgaggctagaacaaccacacaagcaagagagacgccacactcttacccaaaaccttaatgctatgagttta 39404091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 276
Target Start/End: Original strand, 54342986 - 54343087
Alignment:
Q  176 ttggatcactggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatg 274  Q
    |||| |||||||| |||||| | ||||  ||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||  ||||||| |||    
T  54342986 ttgggtcactgggaagctcgggggaccatccacatcgaggctagaacaaccactcaagcaagagagacaccacactcttacccaaaaccttaaggcaatg 54343085  T
Q  275 gg 276  Q
    ||    
T  54343086 gg 54343087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 10246068 - 10245992
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| ||||||||| ||||||||| |||||| |||||||||||||||||  |||||||| ||||||||    
T  10246068 ccacatcgaggctagaacaaccagacaagcaagggagacaccacactcttacccaaaaccttaaggctttgggttta 10245992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 23817688 - 23817764
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  23817688 ccacatcgaggctagaacaaccacactagcaagagagacaccacactcttacccaaaaccttaaggcaatgagttta 23817764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 32941130 - 32941206
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||  ||||||| ||| |||||    
T  32941130 ccacatcgaggctagaacaaccgcacaagcaagagagacgtcacactcttacccaaaaccttaaggcaatgagttta 32941206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 41370506 - 41370430
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||||| |||||||||||||||  ||||||||||||||||  ||||||| |||||||||    
T  41370506 ccacatcgaggctagaacaaccactcaagcaagagagacactacactcttacccaaaactttaaggcaatgggttta 41370430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 44620502 - 44620426
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||| ||| | |||||||||||||||||||||| |||||||||||||||||||||  ||||||| |||||||||    
T  44620502 ccacatcaaggttagaacaaccacacaagcaagagaaacatcacactcttacccaaaaccttaaggcaatgggttta 44620426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 50630762 - 50630838
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||||  ||||||| ||||||||||||||||| |||||||||||||||||  ||||||| |||||||||    
T  50630762 ccacatcgaggctaaaacaaccgcacaagcaagagagacaccacactcttacccaaaaccttaaggcaatgggttta 50630838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 39404546 - 39404471
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||| |||||||||||||||||||||||||| |||| |||| |||||||  |||||||||| ||||||    
T  39404546 cacatcgaggctagaacaaccacacaagcaagagagacaccacattcttgcccaaaaccttaaggctataggttta 39404471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 43174309 - 43174232
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaag 262  Q
    |||||||||| | ||||| ||||||| |||||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  43174309 ggggagctcgggggaccgtccacatcaaggcttgaacaaccacacaagtgagagagacaccacactcttacccaaaag 43174232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 1731654 - 1731730
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||| |||||| |||||||||||||||||||||| ||| |||||||||||||||||  ||||||| || ||||||    
T  1731654 ccacattgaggctagaacaaccacacaagcaagagaaacaccacactcttacccaaaaccttaaggcaattggttta 1731730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 3340956 - 3340880
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||  |||||||  ||||||||    
T  3340956 ccacatcgaggctagaacaaccccacaagcaagaaagacaccacactcttacccaaaaccttaaggcagtgggttta 3340880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 20826366 - 20826290
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||| | || ||| ||||||||||||||||||||||| ||||  |||||||||||||||||    
T  20826366 ccacatcgaggctagaacaatcgcataaggaagagagacatcacactcttacctaaaatgttaaggctatgggttta 20826290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 22028376 - 22028440
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaag 268  Q
    |||||| |||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  22028376 ccacattgaggctagaacaacctcacaagcaagagagacaccacactcttacccaaaacattaag 22028440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 49076838 - 49076914
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||||||  |||||| ||||||||||    
T  49076838 ccacatcgaggctagaacaaccgcacaagcaagaaagacaccacactctaacccaaaaccttaaggttatgggttta 49076914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 54108691 - 54108620
Alignment:
Q  199 gaccgccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||| ||||||  |||||||    
T  54108691 gaccgccacattgaggctagaacaaccacacaagcaagatagacaccacactcttagccaaaaccttaaggc 54108620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 54109060 - 54108986
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||  ||||||| |||||||||    
T  54109060 cacatcgaagctagaacaaccgcacaagcaagagagacaccacactcttacccaaaa-cttaaggcaatgggttta 54108986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 16889523 - 16889609
Alignment:
Q  185 tggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||||||||| ||||| ||||||||||| | |||||| |||||||| |||||||||| || ||||||||||||||  |||||||    
T  16889523 tggggagctcgagggaccgtccacatcgaggttagaacaatcacacaaggaagagagacaccatactcttacccaaaactttaaggc 16889609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 50002575 - 50002518
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| |||||||| |||||| |||||||||| |||||||||||||||||    
T  50002575 ccacatcgaggctagaacaaccgcacaagtaagagagacaccacactcttacccaaaa 50002518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 50459869 - 50459813
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||||||||| |||||||||||||||||||||||||| ||| |||||||| ||||    
T  50459869 cacatcgaggctagaacaaccacacaagcaagagagacaccacgctcttacctaaaa 50459813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 52884844 - 52884768
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactctta-cccaaaagattaaggctatgggttta 280  Q
    |||||||||||| || ||||| ||||||||||||||||| |||||||||| |||||||  ||||||| |||||||||    
T  52884844 cacatcgaggctagatcaaccgcacaagcaagagagacaccacactcttaccccaaaaccttaaggcaatgggttta 52884768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 55933131 - 55933207
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||   ||||| |||||||||| |||||||||||||||||  ||||||| |||||||||    
T  55933131 ccacatcgaggctagaacaactgtacaagtaagagagacaccacactcttacccaaaactttaaggcaatgggttta 55933207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 18932757 - 18932832
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||  ||||||||| |||| |||||||||| |||||||||||| ||||  ||||||| |||||||||    
T  18932757 cacatcgaggctataacaaccactcaagtaagagagacaccacactcttacctaaaaccttaaggcaatgggttta 18932832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 19504842 - 19504779
Alignment:
Q  207 catcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    |||||||||| |||||||||||||||||||| ||||  |||||||||||||||||  |||||||    
T  19504842 catcgaggctagaacaaccacacaagcaagatagacgccacactcttacccaaaactttaaggc 19504779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 36572167 - 36572092
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||||||||||| ||||||| ||||||||| || ||||| ||||||||  ||||||| |||| ||||    
T  36572167 cacatcgaggcttgaacaaccgcacaagcgagagagacaccatactctaacccaaaaccttaaggcaatggattta 36572092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 4390111 - 4390165
Alignment:
Q  207 catcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||||||| |||||||  |||||||||||||||| ||||||||||||||||||    
T  4390111 catcgaggctagaacaactgcacaagcaagagagacgtcacactcttacccaaaa 4390165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 18879955 - 18879898
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||| ||| |||||||||||||| ||| |||||| ||||||||||||||||||    
T  18879955 ccacatcgaagctagaacaaccacacaaccaaaagagacgtcacactcttacccaaaa 18879898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 36608668 - 36608725
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| |||||||||||| ||  ||||||||| |||||||||||||||||    
T  36608668 ccacatcgaggctagaacaaccacactagtgagagagacaccacactcttacccaaaa 36608725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 44621151 - 44621094
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| ||| |||| ||||||||||||| ||| |||||||||||||||||    
T  44621151 ccacatcgaggctagaataaccgcacaagcaagagaaacaccacactcttacccaaaa 44621094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 45489339 - 45489396
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| |||||| ||||| ||||| |||||||||||||||||||| ||||    
T  45489339 ccacatcgaggctagaacaatcacactagcaaaagagacatcacactcttaccaaaaa 45489396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 15841383 - 15841451
Alignment:
Q  212 aggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||| || ||||||||||||  |||||||||||||||||||||||||||  ||||||| ||| |||||    
T  15841383 aggctagagcaaccacacaagtgagagagacatcacactcttacccaaaaccttaaggcaatgtgttta 15841451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 54936344 - 54936269
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| ||||||||||| | |  ||||||||| |||||||||||||||||  ||||||| |||||||||    
T  54936344 ccacatcgaggctagaacaaccacata-gtgagagagacaccacactcttacccaaaaccttaaggcaatgggttta 54936269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 40067179 - 40067136
Alignment:
Q  218 gaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||    
T  40067179 gaacaaccacataagcaagagagacatcacacttttacccaaaa 40067136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 44620808 - 44620737
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgg 275  Q
    ||||||||||| |  ||||||| ||||||||||||||| | |||||||||||||||||  |||||| |||||    
T  44620808 ccacatcgaggatataacaaccgcacaagcaagagagaaaccacactcttacccaaaaccttaaggttatgg 44620737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 3700506 - 3700440
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||||||||||||| ||||||||||   |||||||||||| ||||||| ||||||  |||||||    
T  3700506 ccacatcgaggcttgaataaccacacaaatgagagagacatcatactcttatccaaaaccttaaggc 3700440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 45496934 - 45496897
Alignment:
Q  224 ccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||||||||||||||||| |||||||||||||||||    
T  45496934 ccacacaagcaagagagacaccacactcttacccaaaa 45496897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 4955332 - 4955400
Alignment:
Q  212 aggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||| || ||||| |||||| |||||||||  |||||||||||||||||  ||||||| |||||||||    
T  4955332 aggctagagcaaccgcacaagtaagagagacgccacactcttacccaaaaccttaaggcaatgggttta 4955400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 19895450 - 19895406
Alignment:
Q  199 gaccgccacatcgaggcttgaacaaccacacaagcaagagagaca 243  Q
    |||| ||||||||||||| |||||||| |||||||||||||||||    
T  19895450 gaccaccacatcgaggctagaacaaccgcacaagcaagagagaca 19895406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 20825985 - 20825917
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggcta 272  Q
    ||||||| ||||| |||||||| || ||| |||||| ||| |||||||||||||||||  |||||||||    
T  20825985 ccacatcaaggctagaacaaccgcataaggaagagaaacaccacactcttacccaaaaccttaaggcta 20825917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 22183271 - 22183347
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| ||||||||  |||||  ||||||||  |||||||||| ||||||  ||||||| |||||||||    
T  22183271 ccacatcgaggctagaacaaccgtacaagtgagagagacgccacactcttatccaaaaccttaaggcaatgggttta 22183347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 34646664 - 34646732
Alignment:
Q  212 aggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||| |||||||||||||  | ||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  34646664 aggctagaacaaccacacagaccagagagacaccacactcttacccaaaaccttaaggcaatgagttta 34646732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 43827588 - 43827532
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaa 260  Q
    ||||||||||| | |||||||| |||||| |||||||||| |||||||||| |||||    
T  43827588 ccacatcgaggttagaacaaccgcacaagtaagagagacaccacactcttatccaaa 43827532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 49303055 - 49302979
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||| | |||||| | || ||| |||||| ||| |||||||||||||||||  ||||||| |||||||||    
T  49303055 ccacatcgaggatagaacaatcgcataagtaagagatacaccacactcttacccaaaaccttaaggcaatgggttta 49302979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 16888837 - 16888880
Alignment:
Q  218 gaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||| | ||||| |||||||||||||||||||||||||||||    
T  16888837 gaacaatcgcacaaacaagagagacatcacactcttacccaaaa 16888880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 22027968 - 22028034
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    |||||||||| ||  |||||||||| |||| ||||||||| |||| ||||||||||||  |||||||    
T  22027968 ccacatcgagactaaaacaaccacataagcgagagagacaccacattcttacccaaaaccttaaggc 22028034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 41370807 - 41370741
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||||||| | |||||||||| |||| ||||||||||||||| | ||||| ||||  |||||||    
T  41370807 ccacatcgaggttagaacaaccactcaagtaagagagacatcacatttttacctaaaatcttaaggc 41370741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 45489720 - 45489778
Alignment:
Q  203 gccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||| || |||||||||  ||||| ||||||||| |||||| ||||||||||    
T  45489720 gccacatcgagactagaacaaccatgcaagcgagagagacaccacactattacccaaaa 45489778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 3244458 - 3244515
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| ||||||||| |||||  ||||||||  |||| ||||||||||||    
T  3244458 ccacatcgaggctggaacaaccatacaagtgagagagacgacacattcttacccaaaa 3244515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 23556890 - 23556939
Alignment:
Q  221 caaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    |||||||||||| ||||||||| ||||||||||| ||||||  |||||||    
T  23556890 caaccacacaagtaagagagacgtcacactcttatccaaaactttaaggc 23556939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 11348272 - 11348327
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||| |||||||||||||| |||  ||||||||| |||||||||||| ||||    
T  11348272 cacatcgagacttgaacaaccacataagtgagagagaca-cacactcttaccaaaaa 11348327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 23817462 - 23817498
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagag 240  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  23817462 ccacatcgaggctagaacaaccacactagcaagagag 23817498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 39934964 - 39935040
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  ||||||| |||||||||    
T  39934964 ccacatcgaggctagaacaaccacacaagcaagagagacatcacactcttactcaaaactttaaggcaatgggttta 39935040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 32589852 - 32589776
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| || |||||||||||||||||||||||||||| |||||||||||||||  ||||||| |||||||||    
T  32589852 ccacatcgagcctagaacaaccacacaagcaagagagacatcgcactcttacccaaaaccttaaggcaatgggttta 32589776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 22303964 - 22304040
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||  ||||||| |||||||||    
T  22303964 ccacatcgaggctagaacaaccactcaagcaagagagacaccacactcttatccaaaaccttaaggcaatgggttta 22304040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 37990648 - 37990724
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  37990648 ccacatcgaggctagaacaatcacacaagcaagagagacaccacactcttacccaaaaccttaaggcaatgagttta 37990724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 37990986 - 37991062
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  37990986 ccacatcgaggctagaacaaccacataagcaagagagacaccacactcttacccaaaaccttaaggcgatgagttta 37991062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 32462910 - 32462985
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||  ||||||| |||||||||    
T  32462910 cacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttactcaaaaccttaaggcaatgggttta 32462985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 54018207 - 54018273
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||  |||||||    
T  54018207 ccacatcgaggctagaacaaccacacaagcatgagagacaccacactcttacccaaaaccttaaggc 54018273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 31190154 - 31190085
Alignment:
Q  208 atcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggt 277  Q
    ||||||||| ||||||||  |||||||||||||||| |||||||||||||||||  ||||||||||||||    
T  31190154 atcgaggctagaacaacccgacaagcaagagagacaccacactcttacccaaaaccttaaggctatgggt 31190085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 22304718 - 22304642
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  22304718 ccacatcgagactagaacaaccgcacaagcaagagagacaccacactcttacccaaaaccttaaggcaatgtgttta 22304642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 41359774 - 41359850
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||||||||||| ||||||||  |||| ||||||||||||  ||||||| |||||||||    
T  41359774 ccacatcgaggctagaacaaccacacaagcgagagagacgccacattcttacccaaaaccttaaggcaatgggttta 41359850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 42342099 - 42342175
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||||||||  |||||||||||||||||  ||||||| ||| |||||    
T  42342099 ccacatcgaggctagaacaaccgcacaagcaagagagacgccacactcttacccaaaaccttaaggcaatgagttta 42342175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 43346800 - 43346876
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||| |||||| |||||||| ||||||||||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  43346800 ccacatagaggctagaacaaccgcacaagcaagagagacaccacactcttacccaaaaccttaaggcaatgagttta 43346876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 52634822 - 52634748
Alignment:
Q  206 acatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||| ||||| |||||||  |||||||||||||||| ||||||||||||||||||  ||||||| |||||||||    
T  52634822 acatcaaggctagaacaactgcacaagcaagagagacgtcacactcttacccaaaaccttaaggcaatgggttta 52634748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 54017825 - 54017891
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||||| ||| ||||||||||||||| |||||||||| |||||||||||||||||  |||||||    
T  54017825 ccacatcgaagctagaacaaccacacaagtaagagagacaccacactcttacccaaaaccttaaggc 54017891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 15773003 - 15772946
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||||| ||||||    
T  15773003 ccacatcgaggttagaacaaccacacaagcaagagagacaccacactcttatccaaaa 15772946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 15773343 - 15773275
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaag--agagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||||||| | |||||||||||||||||||  |||||||||||||||||||||||||  |||||||    
T  15773343 ccacatcgaggttagaacaaccacacaagcaagcaagagacatcacactcttacccaaaactttaaggc 15773275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 42342397 - 42342454
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||| |||||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  42342397 ccacattgaggctagaacaaccgcacaagcaagagagacgtcacactcttacccaaaa 42342454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 50612456 - 50612513
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||| |||||| | |||||||||| |||||||||||||||||||||||||||||||||    
T  50612456 ccacgtcgaggatggaacaaccactcaagcaagagagacatcacactcttacccaaaa 50612513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 3135463 - 3135539
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||| ||||||| |||||||||| | ||||  ||||||| |||||||||    
T  3135463 ccacatcgaggctagaacaaccgcacaagcaaaagagacaccacactcttatctaaaaccttaaggcaatgggttta 3135539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 12114571 - 12114647
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||| |||| |||||||| |||||| |||||||||| |||||||||||||||||  ||||| | |||||||||    
T  12114571 ccacatcgtggctagaacaaccgcacaagtaagagagacaccacactcttacccaaaaccttaagacaatgggttta 12114647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 45395662 - 45395738
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| || ||||| ||||||  ||||||||| ||||||||||||||||| |||||| | |||||||||    
T  45395662 ccacatcgaggctagagcaaccccacaagtgagagagacaccacactcttacccaaaacattaagacaatgggttta 45395738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 41359500 - 41359575
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttt 279  Q
    |||||| |||||| |||||||| ||||||||| ||||||  |||||||||||||||||  |||||| |||||||||    
T  41359500 ccacattgaggctagaacaaccgcacaagcaaaagagacgccacactcttacccaaaaccttaaggttatgggttt 41359575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 22303670 - 22303744
Alignment:
Q  206 acatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||| |||||| | |||||| |||||| ||| |||||||||||||||||  ||||||| |||||||||    
T  22303670 acatcgaggctagaacaatcgcacaagtaagagaaacaccacactcttacccaaaaccttaaggcaatgggttta 22303744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 21832354 - 21832428
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| ||||||||| |||||||||||||||    |||||||||||||||  ||||||||||| |||||    
T  21832354 ccacatcgaggctagaacaaccagacaagcaagagagac--gccactcttacccaaaaccttaaggctatgagttta 21832428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 25739434 - 25739491
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| |||| ||| ||||||| |||||||| ||||||||||||||||||    
T  25739434 ccacatcgaggctagaactaccgcacaagctagagagacgtcacactcttacccaaaa 25739491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 29644911 - 29644987
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||||  ||||||| || |||||||||||||  |||||||||||||||||  ||||| | |||||||||    
T  29644911 ccacatcgaggctaaaacaaccgcataagcaagagagacgccacactcttacccaaaaccttaagacaatgggttta 29644987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 35946671 - 35946595
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| ||||||   ||||||||||||||||| |||||| ||||||||||  ||||||| | |||||||    
T  35946671 ccacatcgaggctagaacaattgcacaagcaagagagacaccacacttttacccaaaaccttaaggcaacgggttta 35946595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 53577513 - 53577458
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaa 259  Q
    ||||| ||||||| ||||||||||||  |||||||||||| |||||||||||||||    
T  53577513 ccacaccgaggctagaacaaccacacttgcaagagagacaccacactcttacccaa 53577458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 25755543 - 25755489
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttaccca 258  Q
    ||||||||||||| |||||||| ||||||||||||||||  |||||| |||||||    
T  25755543 ccacatcgaggctagaacaaccgcacaagcaagagagacgccacacttttaccca 25755489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 29644590 - 29644666
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||| |||  ||||||| || |||||||||||||  |||||||||||||||||  ||||| | |||||||||    
T  29644590 ccacatcgaagctaaaacaaccgcataagcaagagagacgccacactcttacccaaaaccttaagacaatgggttta 29644666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 33803261 - 33803337
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||||||||||  || |||||  ||||||||||||||| |  |||| || |||||||||    
T  33803261 ccacatcgaggctagaacaaccacacaagagagggagacgccacactcttacccaataccttaatgcaatgggttta 33803337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 39914399 - 39914335
Alignment:
Q  206 acatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||||||| |||||||| || |||  ||||||||| |||||||||| |||||| ||||||||    
T  39914399 acatcgaggctagaacaaccgcataagtgagagagacaccacactcttatccaaaatattaaggc 39914335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 54017557 - 54017633
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||   ||||| |||| ||| || ||||||| |||||||||||||||||  ||||||| |||||||||    
T  54017557 ccacatcgaggccaaaacaatcacataagtaatagagacaccacactcttacccaaaaccttaaggcaatgggttta 54017633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 243
Target Start/End: Complemental strand, 22304342 - 22304303
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagaca 243  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  22304342 ccacatcgaggctagaacaaccgcacaagcaagagagaca 22304303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 33175668 - 33175746
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcaca--ctcttacccaaaagattaaggctatgggttta 280  Q
    ||||| ||||||| |||||| ||||||||  |||||||| |||||  |||||||||||||  ||||||||||| |||||    
T  33175668 ccacaccgaggctagaacaatcacacaagtgagagagacgtcacacactcttacccaaaaccttaaggctatgagttta 33175746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 53117985 - 53118059
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttt 279  Q
    |||||||| ||| ||||||||||||  |  |||||||||  ||||||||||||||||  ||||||| ||||||||    
T  53117985 cacatcgatgctagaacaaccacacttgtgagagagacactacactcttacccaaaatcttaaggcaatgggttt 53118059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 8328419 - 8328374
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacac 249  Q
    |||||||||||||  ||||||| ||||||||||||||||| |||||    
T  8328419 ccacatcgaggctaaaacaaccccacaagcaagagagacaccacac 8328374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 39336000 - 39336045
Alignment:
Q  225 cacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||||| ||||||||| |||||||||||||||||  |||||||    
T  39336000 cacacaagcgagagagacaccacactcttacccaaaaccttaaggc 39336045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 3135099 - 3135139
Alignment:
Q  221 caaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||| ||||||||||||||||| ||||||||||| |||||    
T  3135099 caaccgcacaagcaagagagacaccacactcttactcaaaa 3135139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 11662099 - 11662044
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||||||||| ||||||||||||||   ||||||||| | |||||||||||||||    
T  11662099 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaa 11662044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 39389219 - 39389143
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||| ||||| ||||||   |||| |||| ||||||| |||||||||||||||||  ||||| | |||||||||    
T  39389219 ccacatcaaggctagaacaattgcacaggcaaaagagacaccacactcttacccaaaaccttaagacaatgggttta 39389143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 5549 - 5489
Alignment:
Q  201 ccgccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  5549 ccgccacatcgaggcttgaacaaccccacaagcaagagagacaccacactcttacccaaaa 5489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 5936 - 5874
Alignment:
Q  199 gaccgccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||| ||||||||| | |||||||||| |||||| || ||||||| ||||||||||| |||||    
T  5936 gaccaccacatcgaagtttgaacaaccccacaagtaaaagagacaccacactcttactcaaaa 5874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 49)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 30441234 - 30441158
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||  ||||||| |||||||||    
T  30441234 ccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttacccaaaaccttaaggcaatgggttta 30441158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 34835025 - 34834949
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  34835025 ccacatcgaggctagaacaaccacacaagcaagagagacaccacactcttacccaaaaccttaaggcaatgagttta 34834949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 3038299 - 3038375
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||  ||||||| |||||||||    
T  3038299 ccacatcgaggctagaacaaccacacaagcaagagagatgccacactcttacccaaaaccttaaggcaatgggttta 3038375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 3669836 - 3669760
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  3669836 ccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttacccaaaaccttaaggcaatgagttta 3669760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 5916016 - 5915940
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  5916016 ccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttacccaaaaccttaaggcaatgagttta 5915940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 40518239 - 40518144
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| | ||||| ||||||| ||||| |||||||||||||||||||||||||  |||||||||||||||||  |||||||  ||||||||    
T  40518239 ggggagctcgggggaccgtccacatcaaggctagaacaaccacacaagcaagagagacgccacactcttacccaaaaccttaaggcattgggttta 40518144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 40579278 - 40579352
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggtt 278  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||   |||||| |||||||    
T  40579278 ccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttacccaaaatcctaaggcaatgggtt 40579352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 3670209 - 3670152
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  3670209 ccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttacccaaaa 3670152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 45122773 - 45122716
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  45122773 ccacatcgaggcttgaacaaccacacaagcaagagagacgccacactcatacccaaaa 45122716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 6876852 - 6876928
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||||||| | ||||| ||||||||||||| |||||||||||||| ||||||| ||| |||||||||||||||||    
T  6876852 ggggagctcgggggaccgtccacatcgaggctagaacaaccacacaaacaagagaaacaccacactcttacccaaaa 6876928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 34835356 - 34835282
Alignment:
Q  206 acatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||| ||| ||||||||||||||||| |||| |||||||||||||||||  ||||||| ||| |||||    
T  34835356 acatcgaggctagaataaccacacaagcaagagtgacaccacactcttacccaaaactttaaggcaatgagttta 34835282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 34835622 - 34835548
Alignment:
Q  206 acatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||| ||| ||||||||||||||||| |||| |||||||||||||||||  ||||||| ||| |||||    
T  34835622 acatcgaggctagaataaccacacaagcaagagtgacaccacactcttacccaaaactttaaggcaatgagttta 34835548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 34835888 - 34835814
Alignment:
Q  206 acatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||| ||| ||||||||||||||||| |||| |||||||||||||||||  ||||||| ||| |||||    
T  34835888 acatcgaggctagaataaccacacaagcaagagtgacaccacactcttacccaaaactttaaggcaatgagttta 34835814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 1014254 - 1014311
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||    
T  1014254 ccacatcgaggctagaacaaccgcacaagcaggagagacaccacactcttacccaaaa 1014311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 40518731 - 40518674
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||| |||||| ||||||||||||||||||||| ||| ||||||||||||||||||    
T  40518731 ccacattgaggctagaacaaccacacaagcaagagtgacgtcacactcttacccaaaa 40518674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 41129137 - 41129080
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||||| |||||||||    
T  41129137 ccacatcgaggtttgaacaaccacacaagtaagagagacaccacactcatacccaaaa 41129080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 5420800 - 5420724
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||||||||||||||||||||  || ||||| ||||||||||||  ||||  ||||||| |||||||||    
T  5420800 ccacatcgaggcttgaacaaccacacaagtgagggagacgtcacactcttacaaaaaaccttaaggcaatgggttta 5420724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 9483196 - 9483272
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||| ||||| ||||||| |||||||||||||||||  ||||| | |||||||||    
T  9483196 ccacatcgaggctagaacaaccgcacgagcaaaagagacaccacactcttacccaaaaccttaagacaatgggttta 9483272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 30359420 - 30359344
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||| ||||||  ||||||  |||||| |||||||||| |||||||||||||||||  |||||||||||||||||    
T  30359420 ccacattgaggctaaaacaacatcacaagaaagagagacaccacactcttacccaaaaccttaaggctatgggttta 30359344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 45122067 - 45122123
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||||||||| |||||||| |||||| |||||||||| |||||||||||||||||    
T  45122067 cacatcgaggctagaacaaccccacaagtaagagagacaccacactcttacccaaaa 45122123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 32640542 - 32640617
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||| |||||| |||| |||||||||||||   ||||||||||||||||  ||||||| |||||||||    
T  32640542 cacatcgaggctagaacaatcacaaaagcaagagagacgcaacactcttacccaaaaccttaaggcaatgggttta 32640617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 6651643 - 6651577
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||||||| | |||||| | ||||||||||||||||| |||||||||||||||||  |||||||    
T  6651643 ccacatcgaggttagaacaatcgcacaagcaagagagacaccacactcttacccaaaaccttaaggc 6651577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 8919153 - 8919219
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||||| ||| |||||||||||||||||| ||||||| |||||||||| ||||||  |||||||    
T  8919153 ccacatcgaagctagaacaaccacacaagcaaaagagacaccacactcttatccaaaaccttaaggc 8919219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 9609220 - 9609158
Alignment:
Q  218 gaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||| ||||||||||||  |||||||||||| |||| |||||||| |||||||||    
T  9609220 gaacaaccacactagcaagagagacgccacactcttaccgaaaacattaaggcgatgggttta 9609158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 20870596 - 20870658
Alignment:
Q  218 gaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||||||||||||||||| |||||||||| ||||||  |||||||  ||||||||    
T  20870596 gaacaaccacacaagcaagagagacaccacactcttatccaaaatcttaaggcagtgggttta 20870658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 33113390 - 33113452
Alignment:
Q  218 gaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||| ||||||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  33113390 gaacaaccacactagcaagagagacaccacactcttacccaaaatcttaaggcaatgagttta 33113452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 25561824 - 25561877
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttaccc 257  Q
    ||||||||||||| || |||||||||||||||||||||  ||||||||||||||    
T  25561824 ccacatcgaggctagagcaaccacacaagcaagagagatgtcacactcttaccc 25561877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 37544499 - 37544556
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| |||||||| |||||| |||| ||||| |||||||||||||||||    
T  37544499 ccacatcgaggctagaacaaccgcacaagtaagaaagacaccacactcttacccaaaa 37544556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 1013880 - 1013956
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| |||||| || ||||||| ||||||||||| |||||   |||||| |||||||||    
T  1013880 ccacatcgaggctagaacaaccgcacaagtaaaagagacaacacactcttactcaaaactctaaggcaatgggttta 1013956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 9482613 - 9482689
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||||||| | ||||||||||  |||||  || |||| |||||||||    
T  9482613 ccacatcgaggctagaacaaccgcacaagcaagagagataccacactcttatacaaaatctttaggcaatgggttta 9482689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 9608894 - 9608818
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||| ||||||||||||  ||||||| |||||||||  ||||||  |||||||||    
T  9608894 ccacatcgaggctagaacaacctcactagcaagagagacgccacactcatacccaaaaccttaaggtgatgggttta 9608818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 30359758 - 30359682
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||| | | |||||||| || ||| |||||||||| |||||||||||||||||  |||||| ||||||||||    
T  30359758 ccacatcgaagttagaacaaccgcataagtaagagagacaccacactcttacccaaaatcttaaggttatgggttta 30359682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 45121665 - 45121741
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| || ||| |||||||| ||||||||||||| |||||  |||||||| | ||||||    
T  45121665 ccacatcgaggctagaacaaccccataagtaagagagatatcacactcttactcaaaaccttaaggctgtaggttta 45121741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 45121919 - 45121995
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||||||| |||||||| ||||| ||||||  |||||| ||||||||||  ||||||| ||| |||||    
T  45121919 ccacatcgaggcttgaataaccacacgagcaaaagagacgccacactgttacccaaaatcttaaggcaatgagttta 45121995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 147968 - 147893
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||| |||||| |||||||  |||||| |||||||||| |||||||||||||||||  ||||||| || ||||||    
T  147968 cacattgaggctagaacaactgcacaagtaagagagacaccacactcttacccaaaaccttaaggcaataggttta 147893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 70297 - 70359
Alignment:
Q  218 gaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||||||||||| |||| ||||||||||||| ||||  |||||||  ||||||||    
T  70297 gaacaaccacacaagcaagatagacgtcacactcttacctaaaaccttaaggcagtgggttta 70359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 6732044 - 6731978
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||||||| | |||||||| || |||||||||||||| ||||||||||| |||||  |||||||    
T  6732044 ccacatcgaggttagaacaaccgcataagcaagagagacaccacactcttactcaaaaccttaaggc 6731978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 8918773 - 8918830
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||| |  |||||||||||| |||||| |||| ||||||||||||||||||    
T  8918773 ccacatcgaggttaaaacaaccacacacgcaagaaagacgtcacactcttacccaaaa 8918830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 43274626 - 43274699
Alignment:
Q  187 gggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaa 259  Q
    ||||||||| | ||||| ||||||||||||| |||||||| || ||| |||||||||| ||||||| |||||||    
T  43274626 gggagctcgggggaccgtccacatcgaggctggaacaaccccataagtaagagagacaccacactcatacccaa 43274699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 147600 - 147524
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||| | ||| |||| ||| ||||||||||||||||  |||||||||||||||||  ||||||| || ||||||    
T  147600 ccacatcaatgctagaactaccgcacaagcaagagagacgccacactcttacccaaaactttaaggcaataggttta 147524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 1513924 - 1514000
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| ||| |||| |||| | |||||||| | |||||| ||||||||||  |||||| ||||||||||    
T  1513924 ccacatcgaggctagaataaccccacatgtaagagagataccacacttttacccaaaaccttaaggttatgggttta 1514000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 9507931 - 9507855
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||||||||||||| | |||  | ||||||  |||||||||||||||||  ||||||  |||||||||    
T  9507931 ccacatcgaggcttgaacaaccatataagagatagagacgccacactcttacccaaaaccttaaggtaatgggttta 9507855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 41972303 - 41972255
Alignment:
Q  211 gaggcttgaacaaccacacaagcaagagagacatcacactcttacccaa 259  Q
    |||||| ||||||||||||||||||||| |||  |||||||||||||||    
T  41972303 gaggctggaacaaccacacaagcaagagtgacgccacactcttacccaa 41972255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 3037959 - 3038016
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagac 242  Q
    |||||||||| | ||||| ||||||||||||| |||||||||||||||  ||||||||    
T  3037959 ggggagctcgggggaccgtccacatcgaggctagaacaaccacacaagatagagagac 3038016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 4154321 - 4154366
Alignment:
Q  235 agagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||||| ||||||||||| |||||||| ||| |||||    
T  4154321 agagagacatcacacacttacccaaaatattaaggcaatgagttta 4154366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 12284021 - 12283964
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||| |||||| |||||||||||||||  |||||||||  ||||||||| ||||||    
T  12284021 ccacatagaggctagaacaaccacacaagtgagagagacactacactcttatccaaaa 12283964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 40579515 - 40579572
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||| | ||||||||  |||||||| ||||||| |||||||||||| ||||    
T  40579515 ccacatcgaggatagaacaaccgtacaagcaatagagacaccacactcttacctaaaa 40579572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 16524497 - 16524457
Alignment:
Q  221 caaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||||||||| |||||||||| ||||||||||| |||||    
T  16524497 caaccacacaagtaagagagacaccacactcttactcaaaa 16524457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 18372004 - 18372060
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||| |||||| || ||||| ||||||| ||||| ||| |||||||||||||||||    
T  18372004 cacattgaggctagagcaaccgcacaagcgagagaaacaccacactcttacccaaaa 18372060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 2578452 - 2578528
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||||  |||||||||||||||||    
T  2578452 ccacatcgaggctagaacaaccgcacaagcaaaagagacaccacactcttacccaaaaccttaaggctatgggttta 2578528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 3409809 - 3409733
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||||| |||||||||    
T  3409809 ccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttacccaaaaaataaaggcaatgggttta 3409733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 2579881 - 2579957
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||| ||||||||||||  |||||||| ||||||||    
T  2579881 ccacatcgaggctagaacaaccgcacaagcaagagagacaccacattcttacccaaaaccttaaggctgtgggttta 2579957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 16107827 - 16107751
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||  ||||||| |||||||||    
T  16107827 ccacatcgaggctagagcaaccgcacaagcaagagagacaccacactcttacccaaaaccttaaggcaatgggttta 16107751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 29518652 - 29518576
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||  ||||||  |||||||||    
T  29518652 ccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttacccaaaaccttaaggtaatgggttta 29518576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 29519069 - 29518993
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||  ||||||  |||||||||    
T  29519069 ccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttacccaaaaccttaaggtaatgggttta 29518993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 32741328 - 32741252
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||  ||||||  |||||||||    
T  32741328 ccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttacccaaaaccttaaggtaatgggttta 32741252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 3409407 - 3409332
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  3409407 cacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttacccaaaaccttaaggcaatgagttta 3409332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 16454743 - 16454648
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| | ||||| ||||||||||||| |||||||| ||||||||||||||||  |||||||||| ||||||  ||||||| |||||||||    
T  16454743 ggggagctcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacgccacactcttatccaaaatcttaaggcaatgggttta 16454648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 16455075 - 16454980
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| | ||||| ||||||||||||| |||||||| ||||||||||||||||  |||||||||||||||||  ||||||| || ||||||    
T  16455075 ggggagctcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacgccacactcttacccaaaaccttaaggcaataggttta 16454980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 2377903 - 2377827
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| ||| |||||| ||||||||| ||||| |||||||||||||||||  ||||||| |||||||||    
T  2377903 ccacatcgaggctagaaaaaccactcaagcaagaaagacaccacactcttacccaaaaccttaaggcaatgggttta 2377827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 2843704 - 2843628
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||||| ||||||||||||| | |||||||||||||||||  ||||||| ||| |||||    
T  2843704 ccacatcgaggctagaacaaccactcaagcaagagagataccacactcttacccaaaaccttaaggcaatgagttta 2843628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 1846897 - 1846821
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||| ||||||| |||||||||| ||||||  ||||||| |||| ||||    
T  1846897 ccacatcgaggctagaacaaccgcacaagcaaaagagacaccacactcttatccaaaaccttaaggcaatggattta 1846821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 2378275 - 2378199
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||| ||||||| ||||  ||||||  |||||||||    
T  2378275 ccacatcgaggctagaacaaccactcaagcaagagagacaccacattcttacctaaaaccttaaggtaatgggttta 2378199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 2579501 - 2579577
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||| | |||||||||||||||||||||||||| || ||| ||||||||||  ||||||| ||| |||||    
T  2579501 ccacatcgaggttagaacaaccacacaagcaagagagacaccatacttttacccaaaaccttaaggcaatgagttta 2579577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 3058375 - 3058299
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||| | |||| |||  |||||||||||||||| |||||||||||||||||  ||||||| |||||||||    
T  3058375 ccacatcgaggttagaaccaccctacaagcaagagagacaccacactcttacccaaaaccttaaggcaatgggttta 3058299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 10074372 - 10074448
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||||||| ||  ||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  10074372 ccacatcgaggctagaacaaccacactagtgagagagacaccacactcttacccaaaaccttaaggcaatgagttta 10074448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 2579119 - 2579174
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaa 260  Q
    |||||||||||| |||||||||||| ||||||||||||| |||||||||| |||||    
T  2579119 cacatcgaggctagaacaaccacacgagcaagagagacaccacactcttagccaaa 2579174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 3415609 - 3415531
Alignment:
Q  204 ccacatcgaggcttga--acaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| ||  |||||| ||||||||||||||||| |||||||||||| ||||  ||||||| |||||||||    
T  3415609 ccacatcgaggctagagaacaaccgcacaagcaagagagacaccacactcttaccaaaaaccttaaggcaatgggttta 3415531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 5832038 - 5832093
Alignment:
Q  206 acatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||    
T  5832038 acatcgaggctagaacaaccacacaagtaagagagacaccacacttttacccaaaa 5832093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 26544197 - 26544122
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||| |||||| |||||| | ||||||||||||||||||||||||||||| |||||  |||||||  ||||||||    
T  26544197 cacattgaggctagaacaatcgcacaagcaagagagacatcacactcttactcaaaaccttaaggcggtgggttta 26544122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 2578844 - 2578901
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||||||||   |||||||||||||||||| ||||||| |||||||||||||||||    
T  2578844 ccacatcgaggtcagaacaaccacacaagcaaaagagacaccacactcttacccaaaa 2578901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 280
Target Start/End: Original strand, 12085046 - 12085119
Alignment:
Q  207 catcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| |||||||||||||||  ||||||||  |||||||||||||||||  ||||||| |||| ||||    
T  12085046 catcgaggctagaacaaccacacaagtgagagagacgccacactcttacccaaaaccttaaggccatggtttta 12085119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 10911715 - 10911639
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||||||||||| |||  || |||||||||||||||||||||  |||||  ||||||| ||| |||||    
T  10911715 ccacatcgaggcttgaacaacaacattagtaagagagacatcacactcttattcaaaactttaaggcaatgagttta 10911639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 12071701 - 12071757
Alignment:
Q  205 cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||||||||| |||||||||||||||  ||||||||  |||||||||||||||||    
T  12071701 cacatcgaggctagaacaaccacacaagtgagagagacgccacactcttacccaaaa 12071757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 35210353 - 35210277
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| || ||||| ||||||||| ||| ||| |||||||||||||||||  ||||||| |||| ||||    
T  35210353 ccacatcgaggctagagcaaccgcacaagcaaaagaaacaccacactcttacccaaaaccttaaggcaatggtttta 35210277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 10073625 - 10073682
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||| ||| |||||||||||| ||  ||||||||| |||||||||||||||||    
T  10073625 ccacatcgatgctagaacaaccacactagtgagagagacaccacactcttacccaaaa 10073682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 1127509 - 1127433
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||| | || |||||||| ||| |||||||||  |||||||||||||||||  ||||||  |||||||||    
T  1127509 ccacatcgaggttagagcaaccacataagtaagagagacgccacactcttacccaaaaccttaaggtaatgggttta 1127433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 1950200 - 1950260
Alignment:
Q  210 cgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||| |||||||| |||||| ||||||||| |||||||||||| |||||  |||||||    
T  1950200 cgaggctagaacaaccgcacaagtaagagagacgtcacactcttactcaaaaccttaaggc 1950260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 14748351 - 14748404
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| ||||||||||||||||||||||     |||||||||||||||||    
T  14748351 ccacatcgaggctagaacaaccacacaagcaagagac----cacactcttacccaaaa 14748404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 6999805 - 6999871
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    |||||||||| || |||||||||||  ||||||||||||  |||||||||| ||||||  |||||||    
T  6999805 ccacatcgagactagaacaaccacattagcaagagagacgccacactcttatccaaaaccttaaggc 6999871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 3409450 - 3409405
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacac 249  Q
    ||||||||||||| |||||||| || |||||||||||||| |||||    
T  3409450 ccacatcgaggctagaacaaccgcataagcaagagagacaccacac 3409405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 6500599 - 6500523
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||  ||||||| |||||||||    
T  6500599 ccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttacccaaaaccttaaggcaatgggttta 6500523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 32487542 - 32487466
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| ||||||||||| |||||||||| || ||||||||||||||||||  ||||||| |||||||||    
T  32487542 ccacatcgaggctagaacaaccacataagcaagagatacgtcacactcttacccaaaaccttaaggcaatgggttta 32487466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 40296324 - 40296400
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||  | ||||| |||||||||    
T  40296324 ccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttacccaaaacctcaaggcaatgggttta 40296400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 15370267 - 15370172
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| | ||||| ||||||||||||| |||||| | ||||||||||||||||| |||||||||||||||||  |||||||| ||| ||||    
T  15370267 ggggagctcgggggaccgtccacatcgaggctagaacaatcccacaagcaagagagacaccacactcttacccaaaaccttaaggctgtggattta 15370172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 36492226 - 36492283
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||    
T  36492226 ccacatcgaggctagaacaaccacacaagcaagagagacaccacactcttatccaaaa 36492283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 624345 - 624269
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||  ||||||||| |||||||||||||||||  | |||||||||||||||    
T  624345 ccacatcgaggctagaacaaccccacaagtgagagagacaccacactcttacccaaaacctcaaggctatgggttta 624269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 3295354 - 3295406
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacc 256  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  3295354 ccacatcgaggctagaacaaccacacaagcaagagagacaacacactcttacc 3295406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 15370551 - 15370475
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||| ||||||||||  ||||||||||| |||||  |||||||||||||||||    
T  15370551 ccacatcgaggctagaacaaccccacaaacaagagagacgccacactcttacgcaaaaccttaaggctatgggttta 15370475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 18603129 - 18603205
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||| |||||||||||||||||||   |||||||||||||||||  ||||||| |||||||||    
T  18603129 ccacatcgaggctagaactaccacacaagcaagagagatgccacactcttacccaaaaccttaaggcaatgggttta 18603205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 34753034 - 34753110
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||||||||||||  |||||||||||||||||  ||||||| || ||||||    
T  34753034 ccacatcgaggctagaacaaccgcacaagcaagagagacgccacactcttacccaaaaccttaaggcaatcggttta 34753110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 41170777 - 41170707
Alignment:
Q  210 cgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||| |||||||||||||||||||| | ||| |||||||||||||||||  ||||||| |||||||||    
T  41170777 cgaggctagaacaaccacacaagcaagaaaaacaccacactcttacccaaaaccttaaggcaatgggttta 41170707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 25328103 - 25328018
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    |||||||||| | ||||| |||||| |||||| ||||||||||||  |||||||||||| |||||||||||||||||  |||||||    
T  25328103 ggggagctcgggggaccgtccacattgaggctagaacaaccacacttgcaagagagacaccacactcttacccaaaaccttaaggc 25328018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 3295024 - 3295100
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||||  ||||||||||||| ||||||||||| ||||||| |||||||||  | ||||| |||||||||    
T  3295024 ccacatcgaggctacaacaaccacacaaccaagagagacaccacactcatacccaaaacctcaaggcaatgggttta 3295100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 11416986 - 11417062
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||| ||| |||||| | ||||||||||||||| ||||||||||||| |||||  ||||||| |||||||||    
T  11416986 ccacatcgaagctagaacaatcccacaagcaagagagagatcacactcttacacaaaaccttaaggcaatgggttta 11417062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 27502045 - 27502121
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||| ||||| ||||  ||||||| || ||||||    
T  27502045 ccacatcgaggatagaacaaccacacaagcaagagagacaccacacttttaccaaaaatcttaaggcaataggttta 27502121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 261
Target Start/End: Complemental strand, 38427386 - 38427311
Alignment:
Q  187 gggagctcgagcgaccgcca-catcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||| | |||||||| |||||||| | |||||||| ||||||||||||||||  |||||||||||||||||    
T  38427386 gggagctcgggggaccgccaacatcgaggttagaacaaccgcacaagcaagagagacgccacactcttacccaaaa 38427311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 301095 - 301029
Alignment:
Q  209 tcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgg 275  Q
    ||||| |||||||| |||||||||||||||||||| |||||||||||| ||||  ||||||| ||||    
T  301095 tcgagacttgaacagccacacaagcaagagagacaccacactcttaccaaaaatcttaaggcaatgg 301029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 13415764 - 13415826
Alignment:
Q  199 gaccgccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||  |||||||| |||||||| ||||||||||||||||  |||||||||||||||||    
T  13415764 gaccgccatttcgaggctagaacaaccgcacaagcaagagagacgccacactcttacccaaaa 13415826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 42405588 - 42405671
Alignment:
Q  186 ggggagctcgagcgaccg-ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    |||||||||| | ||||| ||||||||||||| |||||||| ||||||||  ||||||| |||||||||||||||||  |||||||    
T  42405588 ggggagctcgggggaccgtccacatcgaggctagaacaaccgcacaagca--agagacaccacactcttacccaaaaccttaaggc 42405671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 26900026 - 26900083
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||| ||||| |||||| | ||||||||||||||||| |||||||||||||||||    
T  26900026 ccacatcaaggctagaacaaacccacaagcaagagagacaccacactcttacccaaaa 26900083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 41632931 - 41632874
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||||||| ||  ||||||| ||||||||||||||||| |||||||||||||||||    
T  41632931 ccacatcgagactaaaacaaccgcacaagcaagagagacaccacactcttacccaaaa 41632874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 6500971 - 6500895
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| ||| |||| |||||| |||||||||| |||||||||| ||||||  ||||||| ||| |||||    
T  6500971 ccacatcgaggctagaataaccgcacaagtaagagagacaccacactcttatccaaaaccttaaggcaatgagttta 6500895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 26074761 - 26074685
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||| | || ||||||||| ||  ||||||||| |||||||||||||||||  ||||||| |||||||||    
T  26074761 ccacatcgaggttagagcaaccacactagtgagagagacaccacactcttacccaaaaccttaaggcaatgggttta 26074685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 273
Target Start/End: Complemental strand, 624001 - 623898
Alignment:
Q  171 cactattggatcactggggagctcgagcgaccgcc-acatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaagg 269  Q
    |||| |||| |||||| |||||||| | ||||| | |||| |||||| |||||||| ||||||  ||||||||| ||||||||||| |||||  ||||||    
T  624001 cactgttgggtcactgaggagctcgggggaccgtctacattgaggctagaacaaccccacaagtgagagagacaccacactcttactcaaaaccttaagg 623902  T
Q  270 ctat 273  Q
    ||||    
T  623901 ctat 623898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 26074155 - 26074229
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggtt 278  Q
    ||||||||||| | || ||||||||| ||  ||||||||| |||||||||||||||||  ||||||| |||||||    
T  26074155 ccacatcgaggttagagcaaccacactagtgagagagacaccacactcttacccaaaaccttaaggcaatgggtt 26074229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 36568578 - 36568653
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggtttac 281  Q
    ||||||||||| | |||||||||||||||  ||||||||  |||||||||||| ||||  ||||||| ||||||||||    
T  36568578 ccacatcgaggatagaacaaccacacaag--agagagacgccacactcttaccaaaaaccttaaggcaatgggtttac 36568653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 12662661 - 12662718
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| ||| |||| ||||||||||| || || |||||||||||||||||    
T  12662661 ccacatcgaggctagaagaaccccacaagcaagaaaggcaccacactcttacccaaaa 12662718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 26075170 - 26075247
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactc-ttacccaaaagattaaggctatgggttta 280  Q
    |||||||||||||  |||||||||||  |||||||||||  ||||||| ||||||||||  ||||||| |||||||||    
T  26075170 ccacatcgaggctaaaacaaccacacttgcaagagagacgacacactctttacccaaaaccttaaggcaatgggttta 26075247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 29549244 - 29549321
Alignment:
Q  185 tggggagctcgagcgaccgc-cacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||| |||||||| | ||||||   ||||||||||||| |||||||||||||  |||||||||| ||||||    
T  29549244 tggggagctcgggcgaccgctcgcatcgaattttgaacaaccacataagcaagagagacgccacactcttatccaaaa 29549321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 299638 - 299562
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||| ||| ||||||||  |||||||| ||||||  ||||||||||| |||||  ||||||||||| |||||    
T  299638 ccacatcgatgctagaacaaccgtacaagcaatagagacgccacactcttacacaaaaccttaaggctatgagttta 299562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 1028526 - 1028602
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| |||||||| ||||||  ||||||||  |||||||||||| ||||  |||||| ||| ||||||    
T  1028526 ccacatcgaggctagaacaaccgcacaagtgagagagacgccacactcttaccaaaaaccttaaggttataggttta 1028602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 24489215 - 24489291
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    |||||||||| || |||||||| |||||| || ||||||  ||||||||||| |||||  ||||||| |||||||||    
T  24489215 ccacatcgagactagaacaaccgcacaagtaaaagagacgccacactcttacgcaaaatcttaaggcaatgggttta 24489291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 795255 - 795298
Alignment:
Q  218 gaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    |||||||| ||||||||||||||||| |||||||||||| ||||    
T  795255 gaacaaccgcacaagcaagagagacaccacactcttacctaaaa 795298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 9498692 - 9498739
Alignment:
Q  233 caagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||| |||||||||||||||||  ||||||| |||||||||    
T  9498692 caagagagacaccacactcttacccaaaatcttaaggcaatgggttta 9498739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 9498346 - 9498408
Alignment:
Q  218 gaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||  |||||||||||  ||||||||||| |||| | ||||||| |||||||||    
T  9498346 gaacaaccacacttgcaagagagacgccacactcttactcaaatgcttaaggcaatgggttta 9498408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 35167847 - 35167913
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggc 270  Q
    ||||||||| ||| |||||||||||| ||   ||||||||||||||||||||| |||| || |||||    
T  35167847 ccacatcgatgctagaacaaccacactagtgtgagagacatcacactcttaccaaaaacatcaaggc 35167913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 38427696 - 38427639
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||| | |||||||| ||||||  |||||||| |||||||||||| |||||    
T  38427696 ccacatcgaggttagaacaaccgcacaagtgagagagacgtcacactcttacacaaaa 38427639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 523 - 599
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| ||| |||||| ||||||||| ||||| |||||||||||||||||  ||||||| |||||||||    
T  523 ccacatcgaggctagaaaaaccactcaagcaagaaagacaccacactcttacccaaaaccttaaggcaatgggttta 599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 156 - 208
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacc 256  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||| |||||||    
T  156 ccacatcgaggctagaacaaccactcaagcaagagagacaccacattcttacc 208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 1115 - 1191
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||||| ||||||||||| || ||||||||||| || ||||||||||||||  ||||||| |||||||||    
T  1115 ccacatcgaggctagaacaaccacataaacaagagagacaccatactcttacccaaaaccttaaggcaatgggttta 1191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 47509 - 47433
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaagattaaggctatgggttta 280  Q
    ||||||||||| | |||||||| | ||||||||||||||| |||| | ||||||||||  ||||||| |||||||||    
T  47509 ccacatcgaggttagaacaaccgcgcaagcaagagagacaccacatttttacccaaaactttaaggcaatgggttta 47433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 5131 - 5074
Alignment:
Q  204 ccacatcgaggcttgaacaaccacacaagcaagagagacatcacactcttacccaaaa 261  Q
    ||||||||||||| || ||||| || |||| ||||||||| |||||||||||||||||    
T  5131 ccacatcgaggctagagcaaccgcataagcgagagagacaccacactcttacccaaaa 5074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University