View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19993_low_23 (Length: 280)
Name: NF19993_low_23
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_low_23 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 29783491 - 29783752
Alignment:
| Q |
19 |
gttcaatcatctaataatgctgagcttgatggagaacaagtttccaatgagcaagcataaaagcagtttgtgatccccggtggaccaatgaatgcatcct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29783491 |
gttcaatcatctaataatgctgagcttgatggagaacaagtttccagtgagcaagcacaaaagcagtttgtgatccccggtggaccaatgaatgcgtcct |
29783590 |
T |
|
| Q |
119 |
cttctccagtgcaaagcttctaagttccaccatctcaaacacatgcagcccacatgacttatggagagggatcccagctgggagctcaaacaaaactcca |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29783591 |
cttctccagtgcaaagcttctacgttccaccatctcaaacacatgcagcccacatgacttatggagagggatcccagctgggagctcaaacaaaactcca |
29783690 |
T |
|
| Q |
219 |
gaacgaggtacaattgcattctttgtggccgtttactttctaacgtcattttctattttcac |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29783691 |
gaacgaggtacaattgcattctttgtggccgtttactttctaacatcattttctattttcac |
29783752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 29787498 - 29787759
Alignment:
| Q |
19 |
gttcaatcatctaataatgctgagcttgatggagaacaagtttccaatgagcaagcataaaagcagtttgtgatccccggtggaccaatgaatgcatcct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29787498 |
gttcaatcatctaataatgctgagcttgatggagaacaagtttccagtgagcaagcacaaaagcagtttgtgatccccggtggaccaatgaatgcgtcct |
29787597 |
T |
|
| Q |
119 |
cttctccagtgcaaagcttctaagttccaccatctcaaacacatgcagcccacatgacttatggagagggatcccagctgggagctcaaacaaaactcca |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29787598 |
cttctccagtgcaaagcttctacgttccaccatctcaaacacatgcagcccacatgacttatggagagggatcccagctgggagctcaaacaaaactcca |
29787697 |
T |
|
| Q |
219 |
gaacgaggtacaattgcattctttgtggccgtttactttctaacgtcattttctattttcac |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29787698 |
gaacgaggtacaattgcattctttgtggccgtttactttctaacatcattttctattttcac |
29787759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University