View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_low_25 (Length: 268)
Name: NF19993_low_25
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_low_25 |
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| [»] chr4 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 88 - 268
Target Start/End: Complemental strand, 26825005 - 26824825
Alignment:
| Q |
88 |
agcctatgtttggatgcccgtttgcacccttaaaaacacggcaattcattccaaactcacttctaatgtgctaaaaagatgtttggctcttttagtgaga |
187 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26825005 |
agcctatgtttggatgcccgtctgcacccttaaaaacacgacaattcattccaaactcacttctaatatgctaaaaagatgtttggctcttttagtgaga |
26824906 |
T |
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| Q |
188 |
agcaattcttgttgcttgaattgattctagccaacactccaatttgtagcttttgagttttagagaatcaattctaccata |
268 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26824905 |
agcaattcttgttacttgaattgattctagccatcactccaatttgtagcttttgagttttagagaatcaattttaccata |
26824825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 26825129 - 26825042
Alignment:
| Q |
1 |
cttggaaattgagaaacaaaatttctcttcctcaaaatgagctaaaaa--tacctacaacccacaaatgtcattttctttctctccgt |
86 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| ||||| |
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| T |
26825129 |
cttggaaattgagaaacaaaatttctcttcctcaaaatgaactaaaaaagtacctacaacccccaaatgtcattttctttctttccgt |
26825042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 88 - 268
Target Start/End: Original strand, 26490244 - 26490424
Alignment:
| Q |
88 |
agcctatgtttggatgcccgtttgcacccttaaaaacacggcaattcattccaaactcacttctaatgtgctaaaaagatgtttggctcttttagtgaga |
187 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
26490244 |
agcctatgtttgaatgcccgtttgcacccttaaaagcacggcaattcattccaaactcacttctaatgtgctaaaaagatgtttgactcttttagagaga |
26490343 |
T |
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| Q |
188 |
agcaattcttgttgcttgaattgattctagccaacactccaatttgtagcttttgagttttagagaatcaattctaccata |
268 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| |
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| T |
26490344 |
agcaattcttgttgctagaattgattctagccaacactccaatttgtagcttttgcgtttttgagaatcaattctcccata |
26490424 |
T |
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Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 88 - 268
Target Start/End: Complemental strand, 16124694 - 16124514
Alignment:
| Q |
88 |
agcctatgtttggatgcccgtttgcacccttaaaaacacggcaattcattccaaactcacttctaatgtgctaaaaagatgtttggctcttttagtgaga |
187 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
16124694 |
agcctatgtttggatgcccgtttgcacccttaaaagcacgataattcattccaaactcacttttaatgtgctaaaaagatgtttggctcttttagagaga |
16124595 |
T |
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| Q |
188 |
agcaattcttgttgcttgaattgattctagccaacactccaatttgtagcttttgagttttagagaatcaattctaccata |
268 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| |
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| T |
16124594 |
agcaattcttgttgctagaattgattctagccaacactccaatttgtagcttttgcgttttagagaattagttctaccata |
16124514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 88 - 268
Target Start/End: Original strand, 29681208 - 29681388
Alignment:
| Q |
88 |
agcctatgtttggatgcccgtttgcacccttaaaaacacggcaattcattccaaactcacttctaatgtgctaaaaagatgtttggctcttttagtgaga |
187 |
Q |
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|||||||||||||||||| ||||||||||| |||| ||||||||||| | ||||||||||||| ||| |||||||||||||||| || ||||| |||| |
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| T |
29681208 |
agcctatgtttggatgcctgtttgcaccctcaaaagcacggcaattcgcttaaaactcacttctattgtactaaaaagatgtttggatcatttagagaga |
29681307 |
T |
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| Q |
188 |
agcaattcttgttgcttgaattgattctagccaacactccaatttgtagcttttgagttttagagaatcaattctaccata |
268 |
Q |
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||||||| |||||||| |||||||||||||||||||||| ||||||||||||||| ||| |||| ||||||||||||||| |
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| T |
29681308 |
agcaatttttgttgctagaattgattctagccaacactctaatttgtagcttttgcctttaagagtatcaattctaccata |
29681388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 89 - 268
Target Start/End: Complemental strand, 41626286 - 41626109
Alignment:
| Q |
89 |
gcctatgtttggatgcccgtttgcacccttaaaaacacggcaattcattccaaactcacttctaatgtgctaaaaagatgtttggctcttttagtgagaa |
188 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| ||||| |
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| T |
41626286 |
gcctgtgtttggatgcccgtttgcacccttaaaagcacggcaatttattccaaactcacttctaatatgttaaaaagatgtttggctcttttagagagaa |
41626187 |
T |
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| Q |
189 |
gcaattcttgttgcttgaattgattctagccaacactccaatttgtagcttttgagttttagagaatcaattctaccata |
268 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41626186 |
gcaattcttg--cctatgtttgattctagccaacactccaatttgtagcttttgcgttttagagaatcaattctaccata |
41626109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 89 - 268
Target Start/End: Complemental strand, 30600588 - 30600409
Alignment:
| Q |
89 |
gcctatgtttggatgcccgtttgcacccttaaaaacacggcaattcattccaaactcacttctaatgtgctaaaaagatgtttggctcttttagtgagaa |
188 |
Q |
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||||||||||||||| ||||||||| ||||||| |||||||||||| | ||||||||||||| ||| |||||||||||||||| || ||||| ||||| |
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| T |
30600588 |
gcctatgtttggatgtacgtttgcactcttaaaagcacggcaattcacttaaaactcacttctattgtactaaaaagatgtttggatcatttagagagaa |
30600489 |
T |
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| Q |
189 |
gcaattcttgttgcttgaattgattctagccaacactccaatttgtagcttttgagttttagagaatcaattctaccata |
268 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||| |||||||||||||| ||||| |
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| T |
30600488 |
gcaattcttgttgctagaattgattctagccagcactccaatttatagcttttgcctttaagagaatcaattcttccata |
30600409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 88 - 268
Target Start/End: Complemental strand, 33468758 - 33468578
Alignment:
| Q |
88 |
agcctatgtttggatgcccgtttgcacccttaaaaacacggcaattcattccaaactcacttctaatgtgctaaaaagatgtttggctcttttagtgaga |
187 |
Q |
| |
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|||||||||||||||||| ||||||||||| |||| |||| ||||||| | ||||||||||||| ||| |||||||||| ||||| || |||| |||| |
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| T |
33468758 |
agcctatgtttggatgcctgtttgcaccctcaaaagcacgacaattcacttaaaactcacttctattgtactaaaaagatttttggatcatttatagaga |
33468659 |
T |
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| Q |
188 |
agcaattcttgttgcttgaattgattctagccaacactccaatttgtagcttttgagttttagagaatcaattctaccata |
268 |
Q |
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||| |||||||||||| |||| |||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
33468658 |
agccattcttgttgctagaatcgattctagccaacattccaatttgtagcttttgcctttaagagaatcaattctaccata |
33468578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 88 - 268
Target Start/End: Complemental strand, 43730732 - 43730552
Alignment:
| Q |
88 |
agcctatgtttggatgcccgtttgcacccttaaaaacacggcaattcattccaaactcacttctaatgtgctaaaaagatgtttggctcttttagtgaga |
187 |
Q |
| |
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||||||||||| |||| ||||||||| || |||| |||||||||||| | ||||||| ||||| ||| |||||||||||||||| || ||||| |||| |
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| T |
43730732 |
agcctatgtttagatgtacgtttgcactctcaaaagcacggcaattcacttaaaactcatttctattgtactaaaaagatgtttggatcatttagagaga |
43730633 |
T |
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| Q |
188 |
agcaattcttgttgcttgaattgattctagccaacactccaatttgtagcttttgagttttagagaatcaattctaccata |
268 |
Q |
| |
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|||||||||||||||| |||||||||||||| | |||| |||||| ||||||||| ||| |||||||||||||||||||| |
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| T |
43730632 |
agcaattcttgttgctagaattgattctagcaagcactacaatttatagcttttgcctttaagagaatcaattctaccata |
43730552 |
T |
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