View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_low_34 (Length: 249)
Name: NF19993_low_34
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_low_34 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 11839638 - 11839872
Alignment:
| Q |
14 |
gcagagacctgatttttaataaaattttgctgattnnnnnnnnngccttacaagctcgggtgtctaaaaagaattttgatgatagtaagaaaagaaattt |
113 |
Q |
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| T |
11839638 |
gcagagacctgatttttaataaaattttgctgattaaaaaaaaa-ccttacaagctcatgtgtctaaaaagaattttcatgatagtaagaaaagaaattt |
11839736 |
T |
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| Q |
114 |
tgtaaatgggaagtttaacaagtacaggtctagtaacaaagataaaggaaagttggttcatgataaacctaaaacttaaaagaaaggtagaggatctaat |
213 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11839737 |
tgtaaatgggaagtttaacaagaacaggtcttgtaacaaagataaaggaaggttggttcatgataaacctaaaacttaaaagaaaggtagaggatctaat |
11839836 |
T |
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| Q |
214 |
gtcaatcaagaaaagaaaaataaatgcaggtccttc |
249 |
Q |
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| T |
11839837 |
gtcaatcaagaaaagaaaaagaaatggaggtccttc |
11839872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 23770892 - 23770926
Alignment:
| Q |
14 |
gcagagacctgatttttaataaaattttgctgatt |
48 |
Q |
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| T |
23770892 |
gcagagacctggtttttaataaaattttgctgatt |
23770926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 38485984 - 38486020
Alignment:
| Q |
12 |
gagcagagacctgatttttaataaaattttgctgatt |
48 |
Q |
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| T |
38485984 |
gagcagagacctgatttttaataaaattttgctgatt |
38486020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 9350133 - 9350167
Alignment:
| Q |
14 |
gcagagacctgatttttaataaaattttgctgatt |
48 |
Q |
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| T |
9350133 |
gcagagacctggtttttaataaaattttgctgatt |
9350167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 35062880 - 35062914
Alignment:
| Q |
14 |
gcagagacctgatttttaataaaattttgctgatt |
48 |
Q |
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| T |
35062880 |
gcagagacctgatttttaataaaattttgctgatt |
35062914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 1652536 - 1652502
Alignment:
| Q |
14 |
gcagagacctgatttttaataaaattttgctgatt |
48 |
Q |
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|||||||||| |||||||||||||||||||||||| |
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| T |
1652536 |
gcagagacctaatttttaataaaattttgctgatt |
1652502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 7966725 - 7966695
Alignment:
| Q |
17 |
gagacctgatttttaataaaattttgctgat |
47 |
Q |
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| T |
7966725 |
gagacctgatttttaataaaattttgctgat |
7966695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 6173877 - 6173843
Alignment:
| Q |
14 |
gcagagacctgatttttaataaaattttgctgatt |
48 |
Q |
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||||||| ||||||||||||||||||||||||||| |
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| T |
6173877 |
gcagagatctgatttttaataaaattttgctgatt |
6173843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 31722095 - 31722124
Alignment:
| Q |
18 |
agacctgatttttaataaaattttgctgat |
47 |
Q |
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| T |
31722095 |
agacctgatttttaataaaattttgctgat |
31722124 |
T |
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