View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_low_36 (Length: 239)
Name: NF19993_low_36
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 29214508 - 29214285
Alignment:
| Q |
1 |
caaatatataataaaatgctaagtaacctacaaaattaactccttcnnnnnnnnctcaaataaatagtgtagaaatggaaatacaaaacttagattcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29214508 |
caaatatataataaaatgctaagtaacctacaaaattatctccttcaaaaaaacctcaaataaatagtgtagaaatggaaatacaaaacttagattcaag |
29214409 |
T |
|
| Q |
101 |
acaaagcattagaaagtctgattggaattgaaaagactgccaatgcaatttcagttacacagtattgatacatgatggtattgctgaaagaatgtttggg |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29214408 |
acaaagcattagaaagtgtgattggaattgaaaagactgccaatgcaatttcagttacacagtattgatacatgatggtattgctgaaagaatgtttggg |
29214309 |
T |
|
| Q |
201 |
aattggatattataataactaatt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
29214308 |
aattggatattataataactaatt |
29214285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 29211399 - 29211246
Alignment:
| Q |
64 |
atagtgtagaaatggaaatacaaaacttagattcaagacaaagcattagaaagtctgattggaattgaaaagactgccaatgcaatttcagttacacagt |
163 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| |||| | || | |
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| T |
29211399 |
atagtgtagaaatggaaatacaaaacttagattcaagacaaagcattagaaagtgtgactggaattgaaaagactgccaatgaaattttagttgctcaat |
29211300 |
T |
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| Q |
164 |
attgatacatgatggtattgctgaaagaatgtttgggaattggatattataata |
217 |
Q |
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|||||||||||||| ||| | ||||||||| ||||| ||||||||||||||||| |
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| T |
29211299 |
attgatacatgatgatatggttgaaagaatatttggtaattggatattataata |
29211246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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