View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_low_37 (Length: 235)
Name: NF19993_low_37
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 5331436 - 5331238
Alignment:
| Q |
19 |
atgtttgtgatcctcaggaattagtcctttagcagatggcatgactgaatatggataagcacttttatcagctagctcaataaaagcttcacatgctttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5331436 |
atgtttgtgatcctcaggaattagtcctttagcagatggcatgactgaatatggataagcacttttatcagctagctcaataaaagcttcacatgctttt |
5331337 |
T |
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| Q |
119 |
gctactcttagtttaggaccggctactagtactggtttcactgctttgttgagaacttccgcagctgcttccactgctgcctccaatcccattggatta |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5331336 |
gctactcttagttttggaccggctactagtactggtttcactgctttgttgagaacttccgcagctgcttccactgctgcctccaatcccattggatta |
5331238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 5511314 - 5511227
Alignment:
| Q |
40 |
tagtcctttagcagatggcatgactgaatatggataagcacttttatcagctagctcaataaaagcttcacatgcttttgctactctt |
127 |
Q |
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||||||||||| ||||||| |||||| | || ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
5511314 |
tagtcctttagaagatggcgtgactggacattgataagcacttttatcagctaaatcaataaaagcttcacatgcttttgccactctt |
5511227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 20435339 - 20435141
Alignment:
| Q |
19 |
atgtttgtgatcctcaggaattagtcctttagcagatggcatgactgaatatggataagcacttttatcagctagctcaataaaagcttcacatgctttt |
118 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20435339 |
atgtttgtgatcctcaggaattagtcctttggcagatggcatgactgaatatggataagcacttttatcagctagctcaataaaagcttcacatgctttc |
20435240 |
T |
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| Q |
119 |
gctactcttagtttaggaccggctactagtactggtttcactgctttgttgagaacttccgcagctgcttccactgctgcctccaatcccattggatta |
217 |
Q |
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| T |
20435239 |
gctactcttagttttggaccggctactagtaccggtttcactgctttgttgagaaactctgcagctgcttccactgctgcctctaatcccattggatta |
20435141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 20437823 - 20437709
Alignment:
| Q |
97 |
aataaaagcttcacatgcttttgctactcttagtttaggaccggctactagtactggtttcactgctttgttgagaacttccgcagctgcttccactgct |
196 |
Q |
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||||||||||| |||| ||||| ||||||||||||| ||||| |||||||||| ||| ||||||||||||||||||| | |||| | |||||| | || |
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| T |
20437823 |
aataaaagctttacattctttttctactcttagttttggaccagctactagtattggattcactgctttgttgagaaacactgcagtttcttccattact |
20437724 |
T |
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| Q |
197 |
gcctccaatcccatt |
211 |
Q |
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| T |
20437723 |
gcctccaatcccatt |
20437709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 2065444 - 2065550
Alignment:
| Q |
19 |
atgtttgtgatcctcaggaatta-gtcctttagcagatggcatgactgaatatggataagcacttttatcagctagctcaataaaagcttcacatgcttt |
117 |
Q |
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|||||||||||||||| || ||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2065444 |
atgtttgtgatcctcatgagttaagtcatttagcagatggcatggctgaatatggataagcacttttatcagctagttcaataaaagcttcacatgcttt |
2065543 |
T |
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| Q |
118 |
tgctact |
124 |
Q |
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||||||| |
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| T |
2065544 |
tgctact |
2065550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 25605172 - 25605073
Alignment:
| Q |
111 |
atgcttttgctactcttagtttaggaccggctactagtactggtttcactgctttgttgagaacttccgcagctgcttccactgctgcctccaatcccat |
210 |
Q |
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|||||||||| || || ||||||||||| |||||||||| ||||| ||||||||||| |||| || || ||||| || |||||||||||||| ||||| |
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| T |
25605172 |
atgcttttgccaccctcagtttaggaccacctactagtacaggttttactgctttgttaagaaactctgctgctgcctcaactgctgcctccaaccccat |
25605073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 210
Target Start/End: Complemental strand, 25624826 - 25624701
Alignment:
| Q |
85 |
atcagctagctcaataaaagcttcacatgcttttgctactcttagtttaggaccggctactagtactggtttcactgctttgttgagaacttccgcagct |
184 |
Q |
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||||||||| || | |||||| | | ||||||| || || || ||||||||||| |||||||||| ||||||||||||||||| |||| || || ||| |
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| T |
25624826 |
atcagctagttcgacaaaagcattagatgctttcgccaccctcagtttaggaccacctactagtacaggtttcactgctttgttaagaaactctgctgct |
25624727 |
T |
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| Q |
185 |
gcttccactgctgcctccaatcccat |
210 |
Q |
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|| || |||||||| ||||| ||||| |
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| T |
25624726 |
gcctcaactgctgcttccaaccccat |
25624701 |
T |
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