View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19993_low_38 (Length: 234)

Name: NF19993_low_38
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19993_low_38
NF19993_low_38
[»] chr4 (1 HSPs)
chr4 (181-222)||(26824424-26824465)
[»] chr8 (1 HSPs)
chr8 (181-222)||(26490795-26490836)
[»] chr7 (1 HSPs)
chr7 (181-222)||(41625706-41625747)
[»] chr6 (1 HSPs)
chr6 (183-222)||(29682023-29682062)
[»] chr5 (1 HSPs)
chr5 (181-222)||(33468195-33468236)


Alignment Details
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 26824465 - 26824424
Alignment:
Q  181 taatttctattttggacagttatttaaatttatgttgtatat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26824465 taatttctattttggacagttatttaaatttatgttgtatat 26824424  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 26490795 - 26490836
Alignment:
Q  181 taatttctattttggacagttatttaaatttatgttgtatat 222  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  26490795 taatttctattatggacagttatttaaatttatgttgtatat 26490836  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 41625747 - 41625706
Alignment:
Q  181 taatttctattttggacagttatttaaatttatgttgtatat 222  Q
    ||||||||  ||||||||||||||||||||||||||||||||    
T  41625747 taatttcttatttggacagttatttaaatttatgttgtatat 41625706  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 29682023 - 29682062
Alignment:
Q  183 atttctattttggacagttatttaaatttatgttgtatat 222  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  29682023 atttctattttggaaagttatttaaatttttgttgtatat 29682062  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 33468236 - 33468195
Alignment:
Q  181 taatttctattttggacagttatttaaatttatgttgtatat 222  Q
    |||||||||||||||| |||||||| ||||| ||||||||||    
T  33468236 taatttctattttggaaagttatttgaatttctgttgtatat 33468195  T

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