View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_low_39 (Length: 233)
Name: NF19993_low_39
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 7197204 - 7197403
Alignment:
| Q |
14 |
aagaatatgatcacaaaagatgtgaaagagttgaataatattgatgaagtggatgagaagcatagttcaaattctaagtcattttgggggttcaagagaa |
113 |
Q |
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| T |
7197204 |
aagaaaatgatcacaaaagatgtgaaagagttgaataatattgatgaagtggatgagaagcatagttcaaattctaagtcattttgggggttcaagagaa |
7197303 |
T |
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| Q |
114 |
gtagtagttgtggaagtggatatggtagaagtttatgtcctttgccacttctttctaaaagcaattcaacaggttcatcaacaagtgttaagaggatgct |
213 |
Q |
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| T |
7197304 |
gtagtagttgtggaagtggatatggtagaagtttatgtcctttgccacttctttctaaaagcaattcaacaggttcatcaacaagtgttaagaggatgct |
7197403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 55 - 183
Target Start/End: Original strand, 31483795 - 31483923
Alignment:
| Q |
55 |
tgatgaagtggatgagaagcatagttcaaattctaagtcattttgggggttcaagagaagtagtagttgtggaagtggatatggtagaagtttatgtcct |
154 |
Q |
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| T |
31483795 |
tgatgaagtgtgtgagaaacaaagttcaaattccaagtcattttggagcttcaagagaagtagtagttgtggaagtggatatggaagaagtttgtgtcct |
31483894 |
T |
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| Q |
155 |
ttgccacttctttctaaaagcaattcaac |
183 |
Q |
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| T |
31483895 |
ttaccacttttatctagaagcaattcaac |
31483923 |
T |
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