View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_low_4 (Length: 540)
Name: NF19993_low_4
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 3e-71; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 86 - 262
Target Start/End: Complemental strand, 38984671 - 38984496
Alignment:
| Q |
86 |
gagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaacccttttacacaggagcaaaagaagacattcc |
185 |
Q |
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| T |
38984671 |
gagtttgaattccaattgtgattgtactattagcatgttgcaacctattattcttttacctgctgaagcccttttacacaggagcaaaagaagacattcc |
38984572 |
T |
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| Q |
186 |
ctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacgggtgatgatgccctctgaatccgc |
262 |
Q |
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| T |
38984571 |
ct-gacaactaagggtctaaaacttttggttttgaaataccctttttggaacgggtgatgatgccctctgaatccgc |
38984496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 49 - 262
Target Start/End: Complemental strand, 10583134 - 10582923
Alignment:
| Q |
49 |
tacttggcgatgtctttgggaaactctttttaaaaatgagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgc |
148 |
Q |
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||||||| ||||||| |||||| ||| |||| | |||||||||||| |||||||||||||||| |||| ||| |||| |||||| || |||| |||| |
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| T |
10583134 |
tacttggtgatgtctatgggaacctcctttttagaatgagtttgaacgccatttgtgtttgtacctttagattgctgcagcctattcttttttt--ctgc |
10583037 |
T |
|
| Q |
149 |
tgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacgggtgatgatg |
248 |
Q |
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|||||||||||||||||||||| || ||||||||||||| |||||||||||||| ||||||||||| || ||||||||| |||||||||||||||||||| |
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| T |
10583036 |
tgaaacccttttacacaggagcgaaggaagacattccctagacaactaaggttccaaaacttttggtttggaaatacccattttggaacgggtgatgatg |
10582937 |
T |
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| Q |
249 |
ccctctgaatccgc |
262 |
Q |
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| T |
10582936 |
ccctctgaatccgc |
10582923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 139 - 262
Target Start/End: Complemental strand, 357020 - 356897
Alignment:
| Q |
139 |
tttttcctgctgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacg |
238 |
Q |
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||||| || ||||||||||||||||||||||| || ||||||||||||| || |||||| |||| ||||||||||| || |||||||||| ||||||||| |
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| T |
357020 |
ttttttcttctgaaacccttttacacaggagcgaaggaagacattccctagataactaatgttccaaaacttttggtttggaaataccctctttggaacg |
356921 |
T |
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| Q |
239 |
ggtgatgatgccctctgaatccgc |
262 |
Q |
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|||| ||||||||||||||||||| |
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| T |
356920 |
ggtgttgatgccctctgaatccgc |
356897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 271 - 497
Target Start/End: Complemental strand, 6786885 - 6786671
Alignment:
| Q |
271 |
cctacttgaaaatgaagaatgtcatgaaatg-ttttgaataattt-cattaattcggtacagaaattagagactctagaagttccatgcttgcaaaactt |
368 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6786885 |
cctacttgaaaatgaagaatgtcatgaaatggttttgaataattttcattgattcagtacagaaattagagactctagaagttccatgtttgcaaaactt |
6786786 |
T |
|
| Q |
369 |
atgatgatctatatttggcatataacacaaatataacatagccagttgaaagtatcaacaagaaaaccagataatttatgttaaaatatgacaaataatc |
468 |
Q |
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|||||||||| |||| ||||||||||||||||||||||| || || ||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
6786785 |
atgatgatct--------------acaccaatataacatagccagttgaaagcatgaataagaaaaacagatgatttatgttaaaatatgacaaataatc |
6786700 |
T |
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| Q |
469 |
atgtgacagaggaaaggtgattattaagg |
497 |
Q |
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||||||| ||||||||||||||| ||||| |
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| T |
6786699 |
atgtgacggaggaaaggtgattaataagg |
6786671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 140 - 262
Target Start/End: Complemental strand, 16465650 - 16465528
Alignment:
| Q |
140 |
ttttcctgctgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacgg |
239 |
Q |
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|||||||||||||||||||||| ||| || ||||||| |||||| || | |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16465650 |
ttttcctgctgaaacccttttatacaagaacaaaagaggacatttactagccaactaaggttctaaaacttttggttttgaaataccctttttggaacga |
16465551 |
T |
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| Q |
240 |
gtgatgatgccctctgaatccgc |
262 |
Q |
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||||||||||||||||||||||| |
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| T |
16465550 |
gtgatgatgccctctgaatccgc |
16465528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 171 - 262
Target Start/End: Original strand, 50249155 - 50249246
Alignment:
| Q |
171 |
aaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacgggtgatgatgccctctgaatccgc |
262 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50249155 |
aaaagaagacattccctagacaactaaggttctaaaacttttggttttgaaataccctttttggaacgggtgatgatgccctttgaatccgc |
50249246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 50248348 - 50248405
Alignment:
| Q |
86 |
gagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattcttttt |
143 |
Q |
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|||||| |||||||||||| ||||||| ||||| |||||||| ||||| |||||||| |
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| T |
50248348 |
gagtttaaattccatttgtatttgtaccgttagattgttgcagcctatacttcttttt |
50248405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 6762552 - 6762618
Alignment:
| Q |
93 |
aattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaacccttt |
159 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6762552 |
aattccatttgtgtttgtaccgttagcttgttgcaacctattcttctttttcctgctgaaacccttt |
6762618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 1265396 - 1265469
Alignment:
| Q |
193 |
actaaggttctaaaacttttggctttgaaataccctttttggaacgggtgatgatgccctctgaatccgctgaa |
266 |
Q |
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|||| ||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||||||||||| |||| |
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| T |
1265396 |
actacggttctaaaacttttggttttgtaatgccgtttttagaacgggtgatgatgccctctgaatccgttgaa |
1265469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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