View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_low_42 (Length: 223)
Name: NF19993_low_42
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 17725234 - 17725431
Alignment:
| Q |
14 |
aatattgtaacacaatttctacacaaatgcttataaataaattgcattcatgcaaggctgtcatctgaattgatattctgttgataaatttgactgtgat |
113 |
Q |
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| T |
17725234 |
aatattgtaacacaatttctacacaaacgcttataaacaaattgcattcatgcaaggctgtcatctgaattgatattcagttgataaatttgactgtgat |
17725333 |
T |
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| Q |
114 |
acctcattttctttgtttccctaaactttcattggcctcaattcttgaaagttaatgaattgaaaactttattgctgaattattgtagataataaatt |
211 |
Q |
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| T |
17725334 |
acgtcgttttctttgtttccctaatctttcattggcctcaattcttgaaagttaatgaattgaaaactttattgctgaattattgtagataataaatt |
17725431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 19026463 - 19026660
Alignment:
| Q |
14 |
aatattgtaacacaatttctacacaaatgcttataaataaattgcattcatgcaaggctgtcatctgaattgatattctgttgataaatttgactgtgat |
113 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19026463 |
aatattgtaacacaatttctacacaaacgcttataaacaaattgcattcatgcaaggctgtcatctgaattgatattcagttgataaatttgactgtgat |
19026562 |
T |
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| Q |
114 |
acctcattttctttgtttccctaaactttcattggcctcaattcttgaaagttaatgaattgaaaactttattgctgaattattgtagataataaatt |
211 |
Q |
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|| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19026563 |
acgtcgttttctttgtttccctaatctttcattggcctcaattcttgaaagttaatgaattgaaaactttattgctgaattattgtagataataaatt |
19026660 |
T |
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