View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_low_44 (Length: 203)
Name: NF19993_low_44
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 36387966 - 36388139
Alignment:
| Q |
19 |
tggcatggcatggggatttaatagacattcaaaaacttaatgatcaaggccaagatttatttctacgcgtcgataaaattgaactaggtaagatatacac |
118 |
Q |
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| T |
36387966 |
tggcatggcatggggatttaatagacattcaaaaacttaatgatcaaggccaagatttatttctacgcgtcgataaaattgaactaggtaagatatacac |
36388065 |
T |
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| Q |
119 |
tcctattgtgtttttctttccaaagttgacgccattaaggtgtagtttgaacttatttatactttcttcttctt |
192 |
Q |
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| T |
36388066 |
tcctattgtgtttttctttccaaagttgacgccattaaggtgtagtttgaacttatttatactttcttcttctt |
36388139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 36404678 - 36404798
Alignment:
| Q |
19 |
tggcatggcatggggatttaatagacattcaaaaacttaat---gatcaaggccaagatttatttctacgcgtcgataaaattgaactaggtaagatata |
115 |
Q |
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| T |
36404678 |
tggcatggcatggggatttaatggacattcaaaaacttagtagtgatcaaggccaagatttatttttacgcgtcgataaagttgaactaggtaagatatc |
36404777 |
T |
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| Q |
116 |
cactcctattgtgtttttctt |
136 |
Q |
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| T |
36404778 |
ccctcctactgtttttttctt |
36404798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 36397745 - 36397898
Alignment:
| Q |
19 |
tggcatggcatggggatttaatagacattcaaaaacttaatgatcaaggccaagatttatttctacgcgtcgataaaattgaactaggtaagatatacac |
118 |
Q |
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| T |
36397745 |
tggcatggcatggggatttaatggacattcaaaaacttagtgatcaaggccaagatttatatttgcgcgtcgataaagttgaacttggtaagatattccc |
36397844 |
T |
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| Q |
119 |
tcctattgtgtttttctttccaaagttgacgccattaaggtgtagtttgaactt |
172 |
Q |
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| T |
36397845 |
tcctactgttttttttcttctaaatttgacaccacttatgtgtagtttaaactt |
36397898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 36426158 - 36426251
Alignment:
| Q |
19 |
tggcatggcatggggatttaatagacattcaaaaacttaatgatcaaggccaagatttatttctacgcgtcgataaaattgaactaggtaagat |
112 |
Q |
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| T |
36426158 |
tggcatggcatggggatttaatggacattcaaaaacttagtgatcaaggccaagatttatttttacgcgtcgctaaagttgaactaggtaagat |
36426251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 36374006 - 36374097
Alignment:
| Q |
19 |
tggcatggcatggggatttaatagacattcaaaaacttaatgatcaaggccaagatttatttctacgcgtcgataaaattgaactaggtaag |
110 |
Q |
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| T |
36374006 |
tggcatggtatggggatttaatggacattcaaaaacttagtgatcaaggccaagatttatttgtacgtgtcgatgcagttgaactaggtaag |
36374097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 36434015 - 36434107
Alignment:
| Q |
19 |
tggcatggcatggggatttaatagacattcaaaaacttaatgatcaaggccaagatttatttctacgcgtcgataaaattgaactaggtaaga |
111 |
Q |
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| T |
36434015 |
tggcatggcatggtgatttaatggacattcaaaaagtaagcgatcaaggccaagatttatttttacgtgtcgataaagttgaactaggtaaga |
36434107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 36411997 - 36412106
Alignment:
| Q |
24 |
tggcatggggatttaatagacattcaaaaacttaatgatcaaggccaagatttatttctacgcgtcgataaaattgaactaggtaagatatacactccta |
123 |
Q |
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||||||||| ||||||| |||||||||||||||| | |||| ||||||||||||||| | |||||||| ||| ||||||| |||||||||| | |||||| |
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| T |
36411997 |
tggcatgggaatttaatggacattcaaaaacttagtaatcagggccaagatttatttttgcgcgtcgagaaagttgaacttggtaagatattccctccta |
36412096 |
T |
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| Q |
124 |
ttgtgttttt |
133 |
Q |
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| T |
36412097 |
ctgttttttt |
36412106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 36417328 - 36417437
Alignment:
| Q |
24 |
tggcatggggatttaatagacattcaaaaacttaatgatcaaggccaagatttatttctacgcgtcgataaaattgaactaggtaagatatacactccta |
123 |
Q |
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| T |
36417328 |
tggcatgggaatttaatggacattcaaaaacttagtaatcagggccaagatttatttttgcgcgtcgagaaagttgaacttggtaagatattccctccta |
36417427 |
T |
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| Q |
124 |
ttgtgttttt |
133 |
Q |
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| T |
36417428 |
ctgttttttt |
36417437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 36369387 - 36369474
Alignment:
| Q |
19 |
tggcatggcatggggatttaatagacattcaaaaacttaatgatcaaggccaagatttatttctacgcgtcgataaaattgaactagg |
106 |
Q |
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| T |
36369387 |
tggcatggcatggggatttaatggacgttcagaaacttagcgatcaaggccaggatttatttttacgcgtcaatgcaattgaactagg |
36369474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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