View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_low_5 (Length: 532)
Name: NF19993_low_5
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 28693430 - 28693155
Alignment:
| Q |
17 |
tacaaataagtaaattgagccaacctatgattatggcatcaaagacataatttggcctctaactgtcatgcattgaacaagatgaacagaaagtcaacta |
116 |
Q |
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| T |
28693430 |
tacaaataagtaaattgagccaacctatgattatggcatcaaagacataatttggcctctaactgtcatgcattgaacaagatgaacagaaagtcaacta |
28693331 |
T |
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| Q |
117 |
gagcatattgtctttattcaacaatgatgaaaaattgaaaagagtttctcaatttgcaaaaaggtttgatacatttgaagaatcaaatcaaaccatgtat |
216 |
Q |
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| T |
28693330 |
gagcatattttctttattcaacaatgatgaaaaattgaaaagagtttctcaatttgcaaaaaggtttgatacatttgaaggatcaaatcaaaccatgtat |
28693231 |
T |
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| Q |
217 |
tttggtaagaaaattaagctttttagg-atgttgagtcaatttcttgagggattgagtacaacaataggctcaaag |
291 |
Q |
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| T |
28693230 |
tttggtaagaaaattaagctttttaggaatgttgagtcaatttcttgagggattgagtacaacaataggctcaaag |
28693155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 351 - 515
Target Start/End: Complemental strand, 28692570 - 28692406
Alignment:
| Q |
351 |
atattatgtacatctcagctgcagaaaaccactgttggtatgacctattttacatcacaaagtgaatatgaaagccataaaaagacaaagaatttgaatc |
450 |
Q |
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| T |
28692570 |
atattatgtacatctcagctgcagaaaaccactgttggtatgacctattttacatcacaaagtgaatatgaaagccataaaaagacaaagaatttgaatc |
28692471 |
T |
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| Q |
451 |
caatctaattaaaagcatttttctatagaaccagaaaattatcactagtatctttttgagagcag |
515 |
Q |
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| T |
28692470 |
caatctaattaaaagcatttttctatagaaccagaaaattatcactagtatctttttgagagcag |
28692406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 28692674 - 28692614
Alignment:
| Q |
293 |
agtatctttgctaaaggaggcaatgctataatcaaaagaacttcaaaagtggtgtaaaata |
353 |
Q |
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| T |
28692674 |
agtatctttgctaaaggaggcaatgctataatcaaaagaacttcaaaagtggtgtaaaata |
28692614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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