View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19993_low_6 (Length: 520)
Name: NF19993_low_6
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19993_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 14 - 501
Target Start/End: Complemental strand, 14433757 - 14433270
Alignment:
| Q |
14 |
tcatcatttagttggaaatgctgtgaccaaagataaatacatagttgttggaaatggctcttctcaactcttccaagctgctttgtttgctttgtctcct |
113 |
Q |
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| T |
14433757 |
tcatcatttagttggaaatgctgtgaccaaagataaatacatagttgttggaaatggctcttctcaactcttccaagctgctttgttcgctttgtctcct |
14433658 |
T |
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| Q |
114 |
ttagatgtccctgatcaccctatcaatgttgtttctcctactccttattactcggtgatctttctttcttataaacaaaatggtctcgtatacagactaa |
213 |
Q |
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| T |
14433657 |
ttagatgtccctgatcaccctatcaatgttatttctcctactccttattactcggtgatctttctttcttataaacaaaatggtctcgtatacagactaa |
14433558 |
T |
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| Q |
214 |
aaatgtctcgtatattaaaatatgttttaggtctcatctacaaataaaatttattgggccgaccatgcaaggaaggttaactaacaatgtgtttaatttt |
313 |
Q |
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| T |
14433557 |
aaatgtctcgtatattaaaatatgttttaggtctcacctacaaataaaatttactgggccgaccatgcaaggaaggttaactaacaatgcgtttaatttt |
14433458 |
T |
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| Q |
314 |
attttgtaggaatacaaaaatgcaattaatatattgcattcaaggatgtttcaatggggtggtgatgttgctgtgtatgataaaaatgaatcttacatag |
413 |
Q |
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| T |
14433457 |
attttgtaggaatacaaaaatgcaattaatatattgcattcaaggatgtttcaatggggtggtgatgctgctgtgtatgataaaaatgaatcttacatag |
14433358 |
T |
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| Q |
414 |
aggtggtgacctccccaaacaaccctgatggaacccttcgtgtaccagtggtgaactctgcagctaaagggaaattgattcatgactt |
501 |
Q |
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| T |
14433357 |
aggtggtgacttccccaaacaaccctgatggaacccttcgtgtaccagtggtgaactctgcagctaaagggaaattgattcatgactt |
14433270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 311 - 471
Target Start/End: Complemental strand, 14441791 - 14441631
Alignment:
| Q |
311 |
tttattttgtaggaatacaaaaatgcaattaat-atattgcattcaaggatgtttcaatggggtggtgatgttgctgtgtatgataaaaatgaatcttac |
409 |
Q |
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| T |
14441791 |
tttattttgtaggaataccaagatgtgattgatcata-tgcaatcaaggctatttcaatggggtggtgatgctgctttgtatgatgaaaacaaaccttac |
14441693 |
T |
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| Q |
410 |
atagaggtggtgacctccccaaacaaccctgatggaacccttcgtgtaccagtggtgaactc |
471 |
Q |
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| T |
14441692 |
atagaggtagtgacctccccaaacaaccctgatgggactcttcgaacaccagtggtgaactc |
14441631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 14443164 - 14443011
Alignment:
| Q |
24 |
gttggaaatgctgtgaccaaagataaatacatagttgttggaaatggctcttctcaactcttccaagctgctttgtttgctttgtctcctttagatgtcc |
123 |
Q |
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| T |
14443164 |
gttggtaatgttgtcacaaaagataagttcatagtgttaggaaatggctctactcaacttttcaatgctcttttgtatgcactctctccttcagatccct |
14443065 |
T |
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| Q |
124 |
ctgatcaccctatcaatgttgtttctcctactccttattactcggtgatctttc |
177 |
Q |
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| T |
14443064 |
ctgatcaacctatcaatgttgttgctgctgctccttattactcggtaatctttc |
14443011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 20626885 - 20626818
Alignment:
| Q |
202 |
tatacagactaaaaatgtctcgtatattaaaatatgttttaggtctcatctacaaataaaatttattgg |
270 |
Q |
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| T |
20626885 |
tatacagactaaaaaagcctcatat-ttaaaatttgttttaaagctcgtctacaaataaaatttattgg |
20626818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 270
Target Start/End: Complemental strand, 32598443 - 32598355
Alignment:
| Q |
182 |
ttataaacaaaatggtctcgtatacagactaaaaatgtctcgtatattaaaatatgttttaggtctcatctacaaataaaatttattgg |
270 |
Q |
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| T |
32598443 |
ttataaacaaaaaggcttcatatatagactaaaaatgcctcatatattaaaatttgttttagacctcttctacaaataaaatttattgg |
32598355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 23099316 - 23099366
Alignment:
| Q |
224 |
tatattaaaatatgttttaggtctcatctacaaataaaatttattgggccg |
274 |
Q |
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| T |
23099316 |
tatattaaaatttgttttaggacacatatacgaataaaatttattgggccg |
23099366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 21090454 - 21090503
Alignment:
| Q |
226 |
tattaaaatatgttttaggtctcatctacaaataaaatttattgggccga |
275 |
Q |
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| T |
21090454 |
tattaaaatttgatttagacctcatctacaaataaaaattattgggccga |
21090503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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