View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19993_low_9 (Length: 442)

Name: NF19993_low_9
Description: NF19993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19993_low_9
NF19993_low_9
[»] chr5 (3 HSPs)
chr5 (8-289)||(9817071-9817344)
chr5 (329-442)||(9819612-9819726)
chr5 (329-442)||(9854254-9854368)
[»] chr3 (3 HSPs)
chr3 (325-442)||(47523853-47523971)
chr3 (341-442)||(47529225-47529327)
chr3 (325-442)||(47550902-47551020)
[»] chr7 (1 HSPs)
chr7 (329-442)||(44870459-44870573)
[»] chr8 (1 HSPs)
chr8 (60-170)||(28943770-28943880)
[»] chr2 (1 HSPs)
chr2 (231-268)||(3029748-3029785)
[»] chr1 (1 HSPs)
chr1 (228-289)||(1719191-1719252)


Alignment Details
Target: chr5 (Bit Score: 101; Significance: 7e-50; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 9817344 - 9817071
Alignment:
Q  8 tgtcaccaaagacagcatccaacctaacattagcccctacaaaccagcagagcaccaagaacttcaatacagattagagcacaaaaaatcatacttctaa 107  Q
    |||||||||||||||||||||||||  ||||||||| || |||| | |||  | |||||||||||||||||||||||| |||| ||||||| ||||| |     
T  9817344 tgtcaccaaagacagcatccaacctggcattagcccatataaactaacagcacgccaagaacttcaatacagattagaacacagaaaatcagacttcaac 9817245  T
Q  108 ttttaacccgaatcaacacataaacaaatgtattaaacataaaataatttctgctactccttaccttaggacccc-agaaagcacccttctcctnnnnnn 206  Q
    |||||||||||||||||||||||||| |||| ||||||||| ||| |||| ||||||||||||      |||||| ||| |||||   ||| ||          
T  9817244 ttttaacccgaatcaacacataaacagatgtgttaaacatagaatcatttatgctactcctta------gacccctagagagcac---tcttctaaaaaa 9817154  T
Q  207 nttaatcaacatataacgtggtactctagattaaactcttcatatctcaaaatcaatattttcactaacttcgatattgccat 289  Q
      ||||||||| || | ||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  9817153 tctaatcaacagatcaagtgatactctagattaagctcttcatatctcaaaatcaatattttcactgacttcaatattgccat 9817071  T

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Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 329 - 442
Target Start/End: Original strand, 9819612 - 9819726
Alignment:
Q  329 tcgatattgttccttggtggccacgaaa-ctatctctgcaaccttttgaccataaatccttatagttgccatagaaatcacttcacccattttctccaaa 427  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||    
T  9819612 tcgatattgttccttggtggccacgaaaactacctctgcaaccttttgaccataaatccttacagttgccactgaaatcacttcacccattttctccaaa 9819711  T
Q  428 attacattatagaaa 442  Q
    |||||||||||||||    
T  9819712 attacattatagaaa 9819726  T

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Target: chr5; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 329 - 442
Target Start/End: Complemental strand, 9854368 - 9854254
Alignment:
Q  329 tcgatattgttccttggtggccacgaaa-ctatctctgcaaccttttgaccataaatccttatagttgccatagaaatcacttcacccattttctccaaa 427  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||    
T  9854368 tcgatattgttccttggtggccacgaaaactacctctgcaaccttttgaccataaatccttacagttgccactgaaatcacttcacccattttctccaaa 9854269  T
Q  428 attacattatagaaa 442  Q
    |||||||||||||||    
T  9854268 attacattatagaaa 9854254  T

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Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 325 - 442
Target Start/End: Complemental strand, 47523971 - 47523853
Alignment:
Q  325 gtcttcgatattgttccttggtggccacgaaa-ctatctctgcaaccttttgaccataaatccttatagttgccatagaaatcacttcacccattttctc 423  Q
    |||||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||||||||||||| |  ||||| |||| ||||||||||||    
T  47523971 gtcttcgatattgttccttggtagctacaaaaactatctctgcaaccttttgaccataaatccttatagttgcaaccgaaatgactttacccattttctc 47523872  T
Q  424 caaaattacattatagaaa 442  Q
     ||||| ||||||||||||    
T  47523871 taaaatcacattatagaaa 47523853  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 341 - 442
Target Start/End: Complemental strand, 47529327 - 47529225
Alignment:
Q  341 cttggtggccacgaaa-ctatctctgcaaccttttgaccataaatccttatagttgccatagaaatcacttcacccattttctccaaaattacattatag 439  Q
    ||||||||||| |||| ||||||| |||||||| |||||||||||||||||||| ||||  |||||||||||  |||||||||||||||| |||||||||    
T  47529327 cttggtggccaagaaaactatctcagcaaccttgtgaccataaatccttatagtagccaccgaaatcacttcctccattttctccaaaatcacattatag 47529228  T
Q  440 aaa 442  Q
    |||    
T  47529227 aaa 47529225  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 442
Target Start/End: Complemental strand, 47551020 - 47550902
Alignment:
Q  325 gtcttcgatattgttccttggtggccacgaaa-ctatctctgcaaccttttgaccataaatccttatagttgccatagaaatcacttcacccattttctc 423  Q
    |||||||||||| ||  |||||||||| |||| | ||||| |||||||||||||||||||||||||  ||||||| | || |||||| ||||  ||||||    
T  47551020 gtcttcgatatttttttttggtggccatgaaaacaatctcagcaaccttttgaccataaatccttacggttgccacataactcactttaccccctttctc 47550921  T
Q  424 caaaattacattatagaaa 442  Q
     | ||| ||| ||||||||    
T  47550920 tataatcacagtatagaaa 47550902  T

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Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 329 - 442
Target Start/End: Original strand, 44870459 - 44870573
Alignment:
Q  329 tcgatattgttccttggtggccacgaaa-ctatctctgcaaccttttgaccataaatccttatagttgccatagaaatcacttcacccattttctccaaa 427  Q
    ||||| ||| |||||||| ||||| ||| ||||||||||||||||||||||| ||||||||||||||||||  ||||||||||| |||||||||||||||    
T  44870459 tcgatgttgctccttggtagccacaaaaactatctctgcaaccttttgaccaaaaatccttatagttgccaccgaaatcacttcccccattttctccaaa 44870558  T
Q  428 attacattatagaaa 442  Q
    || ||| ||||||||    
T  44870559 atcacagtatagaaa 44870573  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 28943770 - 28943880
Alignment:
Q  60 caccaagaacttcaatacagattagagcacaaaaaatcatacttctaattttaacccgaatcaacacataaacaaatgtattaaacataaaataatttct 159  Q
    ||||||||| |||||||||||||| |||||| ||||| | ||||||| |||||  || |||||||||||||||| |||| ||||||||||||| ||||||    
T  28943770 caccaagaatttcaatacagattaaagcacagaaaatgagacttctacttttagtcccaatcaacacataaacagatgtgttaaacataaaatcatttct 28943869  T
Q  160 gctactcctta 170  Q
    |||||||||||    
T  28943870 gctactcctta 28943880  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 3029785 - 3029748
Alignment:
Q  231 tctagattaaactcttcatatctcaaaatcaatatttt 268  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  3029785 tctagattaagctcatcatatctcaaaatcaatatttt 3029748  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 1719252 - 1719191
Alignment:
Q  228 tactctagattaaactcttcatatctcaaaatcaatattttcactaacttcgatattgccat 289  Q
    |||||| ||||| |||||||||||  |||||||||||| |||| | ||||| ||||||||||    
T  1719252 tactctcgattacactcttcatataacaaaatcaatatcttcaatgacttcaatattgccat 1719191  T

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