View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19994_low_1 (Length: 569)
Name: NF19994_low_1
Description: NF19994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19994_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 20 - 554
Target Start/End: Complemental strand, 10928219 - 10927683
Alignment:
| Q |
20 |
gggggaatctgtcagttgtacccaagcctctaggaagaagacaatatcatggacccaactttttaacgtgccaaataatagggacagaacaattgcagat |
119 |
Q |
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| T |
10928219 |
gggggaatctgtcagttgtacccaagcctctaggaaaaagacaatatcatggacccaactttttaatgtgccaaatagtagagacaaaacaaatgcagat |
10928120 |
T |
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| Q |
120 |
gcttctggatcatatatcagttcagagtatccattacaaaatctctagaatcatgc----tgctgcagaacacgtacctttatgagtgtctcaaccacat |
215 |
Q |
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| T |
10928119 |
gcttctggatcatatatc--ttcagagtatccgttacaaaatctctataatcatgcatgctgctgcagaacacgtacctttatgagtgtctcaaccacat |
10928022 |
T |
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| Q |
216 |
cgacaaaccccctgcagcatgcggctacaagagcatgtacagcaatatgcggtcggatcaaatcagagctcatgagcaattccccacaccctgcttgccc |
315 |
Q |
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| T |
10928021 |
ctacaaaccccctgcagcatgcggccacaagagcatgtacagcaatatgcggtcggataaaatcagagctcatgagcaattccccacaccctgcttgccc |
10927922 |
T |
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| Q |
316 |
atggtaacttgcctccagaagagcttcttcacatgctggctgggatgcacctgcattaattaatgtctcaagaatatcaagatgaccctccctcactgct |
415 |
Q |
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| T |
10927921 |
atggtaacttgcctccagaagagcttcttcacaagctagctgggatgcccctgcattaattaaggtctcaagaatatcaaggtgcccctccctcaccgct |
10927822 |
T |
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| Q |
416 |
gcagtagttgcaaagcctctgaagagcttttggtttacatcagctccaacactctgccatttcaagaaaaatcaacctgttaatagcctggagtaattta |
515 |
Q |
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| T |
10927821 |
gcagtagttgcaaagcctctgaagagcttttggtttacatcagctccaacactctgccatttcaagaaaaatcaacctgttaatagcctggagtaattta |
10927722 |
T |
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| Q |
516 |
tatccctgacaagatttttcatttattattttcttccat |
554 |
Q |
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| T |
10927721 |
tatccctgacaagatttttcatttattattttcttccat |
10927683 |
T |
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