View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19994_low_2 (Length: 344)
Name: NF19994_low_2
Description: NF19994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19994_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 54473656 - 54473971
Alignment:
| Q |
16 |
aggacttgcttatttacatgaggactgtaagttactatgtgcttgtaatctaattttgacaaatgactaaaatacatttttatggatgaatccgtagaga |
115 |
Q |
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| T |
54473656 |
aggacttgcttatttacacgaggactgtaagttactatgtgcttgtaatctaattttgacaaatgactaaaatacatttttatggatgaatccgtagaga |
54473755 |
T |
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| Q |
116 |
gaactcaaattcgaatatggcgagaatattcattgaccagaatttaccctcttccccccaaaaactaga-ggttaagcccgaaaaactaacattatcatt |
214 |
Q |
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| T |
54473756 |
gaactcaaattcgaatatggcgagaatattcattgaccagaatttaccctcttccccccaaaaactagagggttaagcccgaaaaactaacattatcatt |
54473855 |
T |
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| Q |
215 |
aataacttgttcaaacaataacctgcaggtcaccctagaatcattcaccgagacatcaagggtgcaaacattctaattgaaaacaactttgaagccaaag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54473856 |
aataacttgttcaaacaataacctgcaggtcaccctagaatcattcaccgagacatcaagggtgcaaacattctaattgaaaacaactttgaagccaaag |
54473955 |
T |
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| Q |
315 |
tacgtataatgatcat |
330 |
Q |
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|||||||||||||||| |
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| T |
54473956 |
tacgtataatgatcat |
54473971 |
T |
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