View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19994_low_3 (Length: 326)
Name: NF19994_low_3
Description: NF19994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19994_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 4948512 - 4948202
Alignment:
| Q |
1 |
tgttaatttattttcaattcaaacgtgtcctatatgtaatattgtcctatatataattactaaattattaatttatttacctgagcaacaatggttacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4948512 |
tgttaatttattttcaattcaaacgtgtcctatatgtaatattgtcctatatataaatactaaattataaatttatttacctgagcaacaatggttacat |
4948413 |
T |
|
| Q |
101 |
caacaatgttgtttccaaagggcaaaaaggtactactatggacagtgagattaaggttttctaatttgccaagcaccgtagcggcacgtccactgtgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4948412 |
caacaatgttgtttccaaagggcaaaaaggtactactatggacagtgagattaaggttttctaattggccaagcaccgtagcggcacgtccactgtgttt |
4948313 |
T |
|
| Q |
201 |
gtcacattgaatcttgattagtacatctttgcttgaaactcttacttcgatttcaggaagtggttggttattggagttgctatcatcatcattattatta |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4948312 |
gtcacattgaatcttgatgagtacatctttgcttgaaactcttacttcgatttcaggaagtggttggttattggagttgctatcatcatcattattatta |
4948213 |
T |
|
| Q |
301 |
gtgaagataat |
311 |
Q |
| |
|
||||||||||| |
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| T |
4948212 |
gtgaagataat |
4948202 |
T |
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