View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19994_low_4 (Length: 250)
Name: NF19994_low_4
Description: NF19994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19994_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 5724291 - 5724528
Alignment:
| Q |
1 |
tagttatttatctcaagaacaattaaaaatataaagacagaaattaagaaacatattttctaatttatcgcggagattgattttgatgactttatttata |
100 |
Q |
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| T |
5724291 |
tagttatttatctcaagaacaattaaaaatataaagacagaaattaagaaacatattttctaatttatcgcggagattgattttgatgactttatttata |
5724390 |
T |
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| Q |
101 |
ctcttaaaacttcaagaccaaatatgcttcacggcactttagttaaaaacaaatacttcacggcacaaattttaatcctctaggtaacatgattaattgt |
200 |
Q |
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| T |
5724391 |
ctcttaaaacttcaagaccaaatatgcttcacggcactttagttaaaaa-aaatacttcacggcacaaattttaatcctctaggtaacatgattaattgt |
5724489 |
T |
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| Q |
201 |
attttgaaattcatatcatatacatccatgtctagaata |
239 |
Q |
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| T |
5724490 |
attttgaaattcatatcatatacatccatgtctagaata |
5724528 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 37620216 - 37620176
Alignment:
| Q |
174 |
aatcctctaggtaacatgattaattgta-ttttgaaattca |
213 |
Q |
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| T |
37620216 |
aatcctctaggtaacaagattaattgtagttttgaaattca |
37620176 |
T |
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