View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19995_low_5 (Length: 237)
Name: NF19995_low_5
Description: NF19995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19995_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 31137034 - 31137253
Alignment:
| Q |
1 |
aaaaaatcaaccaagtttggagttcctattgctctcacaagattttcaattatacctttatattcatcagtttctcctgcagagttaacaaaatccatag |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31137034 |
aaaaaatcaaccaagtttggtgttcctattgctctcacaagattttcaattatacctttatattcatcagtttctcctgcagagttaacaaaatccatag |
31137133 |
T |
|
| Q |
101 |
gnnnnnnnngtgtttgacaaaaaattcaatgaagtcttaaaaacagcttttccaacatcaacagcttcaccaattaagctacttctatcaatatcacata |
200 |
Q |
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| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
31137134 |
-aaaaaaatgcgtttgacaaaaaattcaatgaagttttaaaaacagcttttccaacatcaacagcttccccaattaagttacttctatcaatatcacata |
31137232 |
T |
|
| Q |
201 |
aaagctcttgaagcttcttac |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
31137233 |
aaagctcttgaagcttcttac |
31137253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31152005 - 31151786
Alignment:
| Q |
1 |
aaaaaatcaaccaagtttggagttcctattgctctcacaagattttcaattatacctttatattcatcagtttctcctgcagagttaacaaaatccatag |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31152005 |
aaaaaatcaaccaagtttggtgttcctattgctctcacaagattttcaattatacctttatattcatcagtttctcctgcagagttaacaaaatccatag |
31151906 |
T |
|
| Q |
101 |
gnnnnnnnngtgtttgacaaaaaattcaatgaagtcttaaaaacagcttttccaacatcaacagcttcaccaattaagctacttctatcaatatcacata |
200 |
Q |
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| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
31151905 |
-aaaaaaatgcgtttgacaaaaaattcaatgaagttttaaaaacagcttttccaacatcaacagcttccccaattaagttacttctatcaatatcacata |
31151807 |
T |
|
| Q |
201 |
aaagctcttgaagcttcttac |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
31151806 |
aaagctcttgaagcttcttac |
31151786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31130158 - 31129939
Alignment:
| Q |
1 |
aaaaaatcaaccaagtttggagttcctattgctctcacaagattttcaattatacctttatattcatcagtttctcctgcagagttaacaaaatccatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31130158 |
aaaaaatcaaccaagtttggagttcctattgccctcacaaggttttcaactatacctttatattcatcagtttcacctgcagagttaacaaaatccata- |
31130060 |
T |
|
| Q |
101 |
gnnnnnnnngtgtttgacaaaaaattcaatgaagtcttaaaaacagcttttccaacatcaacagcttcaccaattaagctacttctatcaatatcacata |
200 |
Q |
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| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| ||| | || ||||||| || |
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| T |
31130059 |
gagaaaaaagtgtttgacaaaaaattcaatgaagtcttaaaagcagctcttcctacatcaacagcttcaccaattaagctgcttttttctatatcactta |
31129960 |
T |
|
| Q |
201 |
aaagctcttgaagcttcttac |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
31129959 |
aaagctcttgaagcttcttac |
31129939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24468407 - 24468626
Alignment:
| Q |
1 |
aaaaaatcaaccaagtttggagttcctattgctctcacaagattttcaattatacctttatattcatcagtttctcctgcagagttaacaaaatccatag |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||| |||| |||||| |||| ||||||| ||||||||||| ||||||||||||||||||||||| | |
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| T |
24468407 |
aaaaaatcaaccaagtttggtgttcctattgctgtcataagactttcaactatatctttatactcatcagtttcacctgcagagttaacaaaatccat-g |
24468505 |
T |
|
| Q |
101 |
gnnnnnnnngtgtttgacaaaaaattcaatgaagtcttaaaaacagcttttccaacatcaacagcttcaccaattaagctacttctatcaatatcacata |
200 |
Q |
| |
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| ||||||||||||| |||||| ||||||||||| ||||||| ||||||| || |||||||||| ||||||||||||||||||||||||| |
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| T |
24468506 |
gagaaaaaagtgtttgacaaaacattcaacaaagtcttaaaagcagctttctcaacatccactgcttcaccaaccaagctacttctatcaatatcacata |
24468605 |
T |
|
| Q |
201 |
aaagctcttgaagcttcttac |
221 |
Q |
| |
|
|||||||||| |||||||||| |
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|
| T |
24468606 |
aaagctcttgcagcttcttac |
24468626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24484906 - 24485125
Alignment:
| Q |
1 |
aaaaaatcaaccaagtttggagttcctattgctctcacaagattttcaattatacctttatattcatcagtttctcctgcagagttaacaaaatccatag |
100 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |||| ||||||||||||||||||| |
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| T |
24484906 |
aaaaaatcaaccacatttggtgttcctattgctctcacaagattttcaacaatatctttatactcatcagtttcacctgtggagttaacaaaatccatag |
24485005 |
T |
|
| Q |
101 |
gnnnnnnnngtgtttgacaaaaaattcaatgaagtcttaaaaacagcttttccaacatcaacagcttcaccaattaagctacttctatcaatatcacata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||| || |||| || | ||||||| |||||||||||||||| || |
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| T |
24485006 |
-agaaaaaagtgtttgacaaaaaattcaatgaagtcttaaaagtagctcttccaacatctactgctttacaagttaagctgcttctatcaatatcactta |
24485104 |
T |
|
| Q |
201 |
aaagctcttgaagcttcttac |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
24485105 |
aaagctcttgaagcttcttac |
24485125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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