View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19996_high_20 (Length: 285)

Name: NF19996_high_20
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19996_high_20
NF19996_high_20
[»] chr2 (22 HSPs)
chr2 (9-285)||(6694059-6694332)
chr2 (30-104)||(11791550-11791624)
chr2 (133-242)||(11791751-11791860)
chr2 (130-228)||(5009253-5009351)
chr2 (29-128)||(4188772-4188871)
chr2 (141-242)||(4188973-4189074)
chr2 (130-224)||(31630225-31630318)
chr2 (130-224)||(25895065-25895159)
chr2 (151-224)||(36694484-36694557)
chr2 (127-242)||(4188638-4188753)
chr2 (173-224)||(4511942-4511993)
chr2 (182-224)||(31630159-31630201)
chr2 (173-242)||(12612462-12612531)
chr2 (182-224)||(1316129-1316171)
chr2 (132-242)||(3876889-3876999)
chr2 (186-224)||(36217208-36217246)
chr2 (182-224)||(43699440-43699482)
chr2 (151-224)||(8035440-8035513)
chr2 (131-224)||(14166339-14166432)
chr2 (182-218)||(4511871-4511907)
chr2 (186-242)||(29379958-29380014)
chr2 (173-224)||(36694406-36694458)
[»] chr5 (30 HSPs)
chr5 (127-242)||(7209864-7209979)
chr5 (130-224)||(35187994-35188088)
chr5 (130-242)||(1996218-1996330)
chr5 (137-242)||(5746263-5746368)
chr5 (175-242)||(20927921-20927988)
chr5 (151-224)||(16327192-16327265)
chr5 (173-242)||(33491588-33491657)
chr5 (69-136)||(7210133-7210200)
chr5 (130-221)||(35812065-35812156)
chr5 (150-225)||(36760767-36760842)
chr5 (151-224)||(4943069-4943143)
chr5 (186-228)||(17400812-17400854)
chr5 (182-224)||(23661971-23662013)
chr5 (182-224)||(23796557-23796599)
chr5 (140-242)||(36759679-36759781)
chr5 (127-224)||(7210211-7210308)
chr5 (29-137)||(36760627-36760734)
chr5 (173-224)||(28559329-28559380)
chr5 (150-224)||(35461530-35461604)
chr5 (186-224)||(38680664-38680702)
chr5 (175-221)||(38682799-38682845)
chr5 (186-223)||(25456310-25456347)
chr5 (182-227)||(35461637-35461682)
chr5 (182-227)||(37642885-37642930)
chr5 (186-227)||(40980742-40980783)
chr5 (176-224)||(4942992-4943040)
chr5 (186-222)||(10827143-10827179)
chr5 (151-224)||(12774319-12774394)
chr5 (130-226)||(35813380-35813476)
chr5 (173-229)||(38680714-38680770)
[»] chr1 (13 HSPs)
chr1 (29-123)||(41007205-41007299)
chr1 (130-241)||(52913300-52913411)
chr1 (131-224)||(2633306-2633399)
chr1 (175-227)||(2633236-2633288)
chr1 (186-228)||(26879666-26879708)
chr1 (186-227)||(7489990-7490031)
chr1 (175-227)||(18981081-18981133)
chr1 (150-224)||(33650493-33650567)
chr1 (175-224)||(1173105-1173153)
chr1 (151-224)||(26879571-26879644)
chr1 (186-242)||(52913047-52913104)
chr1 (131-223)||(38698944-38699036)
chr1 (140-224)||(41007432-41007516)
[»] chr3 (33 HSPs)
chr3 (127-224)||(47891266-47891363)
chr3 (128-242)||(28813913-28814027)
chr3 (175-228)||(43650074-43650127)
chr3 (129-227)||(27768397-27768495)
chr3 (138-224)||(36900031-36900117)
chr3 (175-242)||(54343448-54343515)
chr3 (130-224)||(32186622-32186716)
chr3 (173-228)||(14964919-14964974)
chr3 (151-224)||(18019992-18020065)
chr3 (182-243)||(26976497-26976558)
chr3 (182-242)||(25848363-25848423)
chr3 (140-224)||(25848457-25848541)
chr3 (130-240)||(43650144-43650255)
chr3 (127-224)||(5442549-5442647)
chr3 (189-227)||(27768337-27768375)
chr3 (182-224)||(36667281-36667323)
chr3 (175-224)||(46337596-46337645)
chr3 (151-224)||(50332527-50332600)
chr3 (186-242)||(40286254-40286310)
chr3 (186-242)||(43650000-43650056)
chr3 (173-224)||(14624239-14624290)
chr3 (175-242)||(27768511-27768578)
chr3 (29-110)||(3378993-3379074)
chr3 (173-242)||(26724086-26724155)
chr3 (173-242)||(39714551-39714620)
chr3 (175-224)||(40286332-40286381)
chr3 (151-228)||(47069699-47069776)
chr3 (127-220)||(51833353-51833446)
chr3 (182-242)||(252122-252182)
chr3 (138-222)||(26976412-26976496)
chr3 (186-242)||(28814063-28814119)
chr3 (127-195)||(40286395-40286463)
chr3 (186-242)||(47573711-47573767)
[»] chr4 (27 HSPs)
chr4 (130-242)||(17232004-17232116)
chr4 (127-227)||(12592270-12592370)
chr4 (127-242)||(45787180-45787295)
chr4 (151-224)||(26782387-26782459)
chr4 (173-229)||(24684137-24684193)
chr4 (150-224)||(2787979-2788052)
chr4 (200-242)||(17236790-17236832)
chr4 (59-137)||(40120701-40120779)
chr4 (183-224)||(40395193-40395234)
chr4 (127-224)||(51950564-51950661)
chr4 (151-224)||(53863411-53863484)
chr4 (131-242)||(2470058-2470169)
chr4 (173-224)||(12498714-12498765)
chr4 (182-224)||(41083148-41083190)
chr4 (139-228)||(41519231-41519320)
chr4 (176-229)||(41519347-41519400)
chr4 (127-219)||(40147050-40147142)
chr4 (186-242)||(50290403-50290459)
chr4 (182-224)||(45038377-45038419)
chr4 (187-224)||(2788160-2788197)
chr4 (186-227)||(12498885-12498926)
chr4 (159-224)||(26782471-26782536)
chr4 (176-224)||(50290215-50290264)
chr4 (186-242)||(25055897-25055953)
chr4 (127-195)||(40119579-40119647)
chr4 (186-242)||(46196126-46196182)
chr4 (188-224)||(53863351-53863387)
[»] chr7 (22 HSPs)
chr7 (127-227)||(40951787-40951890)
chr7 (138-224)||(30869557-30869643)
chr7 (151-224)||(29710490-29710563)
chr7 (180-242)||(6069260-6069322)
chr7 (150-224)||(6694625-6694698)
chr7 (151-224)||(29019342-29019415)
chr7 (175-227)||(4048407-4048459)
chr7 (29-137)||(22026487-22026595)
chr7 (186-242)||(42312775-42312831)
chr7 (175-227)||(43258335-43258387)
chr7 (130-224)||(4048296-4048390)
chr7 (127-241)||(23164045-23164159)
chr7 (182-228)||(40951720-40951766)
chr7 (133-242)||(3198287-3198396)
chr7 (141-242)||(6068728-6068829)
chr7 (185-242)||(6694547-6694604)
chr7 (130-223)||(27280709-27280802)
chr7 (131-224)||(43258405-43258498)
chr7 (175-224)||(44293866-44293915)
chr7 (173-224)||(11975632-11975684)
chr7 (141-197)||(22026408-22026464)
chr7 (186-242)||(46713286-46713342)
[»] chr6 (17 HSPs)
chr6 (150-224)||(21598615-21598689)
chr6 (153-238)||(2761574-2761659)
chr6 (151-224)||(17136938-17137011)
chr6 (134-242)||(3848564-3848672)
chr6 (173-224)||(2761495-2761546)
chr6 (191-242)||(3895696-3895747)
chr6 (182-224)||(364199-364241)
chr6 (182-229)||(35050625-35050672)
chr6 (130-224)||(364079-364173)
chr6 (29-110)||(5197588-5197669)
chr6 (151-224)||(10356432-10356505)
chr6 (151-228)||(13273236-13273313)
chr6 (182-227)||(24059756-24059801)
chr6 (136-224)||(31091261-31091349)
chr6 (186-242)||(17136860-17136916)
chr6 (183-227)||(17342531-17342575)
chr6 (130-242)||(35225558-35225670)
[»] chr8 (19 HSPs)
chr8 (128-224)||(24793055-24793151)
chr8 (140-224)||(9399985-9400070)
chr8 (173-242)||(28618829-28618898)
chr8 (127-224)||(36052993-36053090)
chr8 (151-224)||(41151499-41151572)
chr8 (182-242)||(24827433-24827493)
chr8 (186-242)||(24909669-24909725)
chr8 (186-225)||(24083296-24083335)
chr8 (173-224)||(27127968-27128019)
chr8 (188-242)||(27855573-27855627)
chr8 (186-224)||(41151439-41151477)
chr8 (175-224)||(20209354-20209403)
chr8 (175-224)||(20229062-20229111)
chr8 (185-222)||(22813144-22813181)
chr8 (130-195)||(22813460-22813525)
chr8 (186-227)||(38414625-38414665)
chr8 (160-224)||(9399910-9399973)
chr8 (186-234)||(14550276-14550324)
chr8 (186-242)||(16913017-16913073)
[»] scaffold0157 (2 HSPs)
scaffold0157 (173-224)||(21712-21763)
scaffold0157 (186-227)||(21551-21592)
[»] scaffold0018 (1 HSPs)
scaffold0018 (151-224)||(161575-161648)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 285
Target Start/End: Complemental strand, 6694332 - 6694059
Alignment:
Q  9 aattattcttccgggtataatgaggttcgtaaagaatgacaatgagagagttagagtttgttgcaaggatgaatgcccttggattgttttatgttctaag 108  Q
    |||||||||||  ||||||||||||||| |||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||    
T  6694332 aattattcttctaggtataatgaggttcataaagaatgacaatgagagagtt------tgttgcaaggatgaatgcccttggattgttttatgttctaag 6694239  T
Q  109 atacctaatcaggatgcatgtcacatcattgtttttataacgtttggttaacataaagactcatttg-aaaatctttacaaacttaaaagatttatgtgt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  6694238 atacctaatcaggatgcatgtcacatcattgtttttataacgtttgattaacagaaagactcatttgaaaaatctttacaaacttaaaagatttatgtgt 6694139  T
Q  208 gatcaaaataacttaaatgacttatttattacaaagaaaaatgctaaaaacatatatttta--acacactcaatttaatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  6694138 gatcaaaataacttaaatgacttatttattacaaagaaaaatgctaacaacatatattttaacacacactcaatttaatt 6694059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 11791624 - 11791550
Alignment:
Q  30 gaggttcgtaaagaatgacaatgagagagttagagtttgttgcaaggatgaatgcccttggattgttttatgttc 104  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||| | ||||||||||||||||||||||||    
T  11791624 gaggttcataaagaatgacaatgagagagtcagagttggttgcaaggacggatgcccttggattgttttatgttc 11791550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 133 - 242
Target Start/End: Original strand, 11791751 - 11791860
Alignment:
Q  133 atcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttat 232  Q
    ||||| |||||| |||||||||||||||| || |||| | |||||||  |||||||||||| | || |||||||||| |||||||||||||||||| |||    
T  11791751 atcatcgtttttgtaacgtttggttaacaaaatgactaaattgaaaacgtttacaaacttataggacttatgtgtgaccaaaataacttaaatgacatat 11791850  T
Q  233 ttattacaaa 242  Q
     |||||||||    
T  11791851 ctattacaaa 11791860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 5009351 - 5009253
Alignment:
Q  130 cacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgac 228  Q
    |||||||| |||||| ||| |||||||||| | || |||| | |||||||  ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  5009351 cacatcatcgtttttgtaatgtttggttaagagaaggactaaattgaaaacatttacaaacataaaagacttatgtgtgatcaaaataacttaaatgac 5009253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 4188871 - 4188772
Alignment:
Q  29 tgaggttcgtaaagaatgacaatgagagagttagagtttgttgcaaggatgaatgcccttggattgttttatgttctaagatacctaatcaggatgcatg 128  Q
    |||||||| |||||||||| |||||||| || | ||||  ||||||||||| ||| |||||||||||||||| ||||||||||||| || ||||| ||||    
T  4188871 tgaggttcataaagaatgaaaatgagagggtcaaagttgattgcaaggatgtatgtccttggattgttttatattctaagatacctgatgaggatacatg 4188772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 4188973 - 4189074
Alignment:
Q  141 ttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattaca 240  Q
    ||||||||||||||||||||| || |||| | |||||||  |||| ||||||||  || |||| |||||||||||||||||||| ||| ||| |||||||    
T  4188973 ttttataacgtttggttaacaaaatgactaaattgaaaacgtttataaacttaatggacttatatgtgatcaaaataacttaaaggacctatatattaca 4189072  T
Q  241 aa 242  Q
    ||    
T  4189073 aa 4189074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 31630225 - 31630318
Alignment:
Q  130 cacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||| |||||| |||| ||||||||||| || |||| | |||||||  ||||||||||| ||||| |||||||||| ||||||||||||||    
T  31630225 cacatcatcgtttttgtaacatttggttaacaaaatgactaaattgaaaacatttacaaactt-aaagacttatgtgtgaccaaaataacttaaa 31630318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 25895065 - 25895159
Alignment:
Q  130 cacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||| |||||| ||| |||||||||||| || |||| | |||||||  |||||||||| ||| || ||||||||||  |||||||||||||    
T  25895065 cacatcatcgtttttgtaatgtttggttaacaaaaggactaaattgaaaacgtttacaaactgaaaggacttatgtgtgactaaaataacttaaa 25895159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 36694484 - 36694557
Alignment:
Q  151 tttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||||| ||||||| | |||||| | |||||||||||||| || |||||||||| |||||||| |||||    
T  36694484 tttggttaacagaaagactaaattgaaattttttacaaacttaaaggacttatgtgtgaccaaaataatttaaa 36694557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 242
Target Start/End: Complemental strand, 4188753 - 4188638
Alignment:
Q  127 tgtcacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatg 226  Q
    |||||| ||||||||||| ||| |||||||||| | || || | | |||||||  |||| ||||||||| || || ||||||| |||||||||||||  |    
T  4188753 tgtcacgtcattgtttttgtaatgtttggttaatagaatgaataaattgaaaacgtttagaaacttaaaggacttgtgtgtgaccaaaataacttaatgg 4188654  T
Q  227 acttatttattacaaa 242  Q
    | |||||| |||||||    
T  4188653 agttatttgttacaaa 4188638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 4511993 - 4511942
Alignment:
Q  173 ttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||| |||||||||||||| || |||| ||||||||||||||||||||    
T  4511993 ttgaaaatgtttacaaacttaaaggacttatatgtgatcaaaataacttaaa 4511942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 31630201 - 31630159
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  31630201 tttacaaacttaaaagacttatgtgtgaccaaaataacttaaa 31630159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 12612531 - 12612462
Alignment:
Q  173 ttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||  |||||||||||||| || ||||||||||||||||||| ||||| |||  || |||||||||    
T  12612531 ttgaaaacatttacaaacttaaatgacttatgtgtgatcaaaataatttaaaagaccaatctattacaaa 12612462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 1316171 - 1316129
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||||||||| || ||||||| |||||||||||||||||    
T  1316171 tttacaaacttaaaggacttatgtgcgatcaaaataacttaaa 1316129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 242
Target Start/End: Original strand, 3876889 - 3876999
Alignment:
Q  132 catcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgactta 231  Q
    |||||| |||||| ||| |||||||||| | || |||| | ||| |||  |||||| || |||| || |||||||||| |||||||||||||| ||   |    
T  3876889 catcatcgtttttgtaatgtttggttaatagaaggactaaattggaaaggtttacatacgtaaaggacttatgtgtgaccaaaataacttaaaagatcaa 3876988  T
Q  232 tttattacaaa 242  Q
    |||||||||||    
T  3876989 tttattacaaa 3876999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 36217208 - 36217246
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  36217208 caaacttaaaagacttatgtgtgaccaaaataacttaaa 36217246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 43699440 - 43699482
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||||||||||| |||||||||| |||||||| |||||    
T  43699440 tttacaaacttaaaagacttatgtgtgaccaaaataaattaaa 43699482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 8035440 - 8035513
Alignment:
Q  151 tttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||||||||| |||| | || ||||  ||||||||||||||| | |||||| | | ||||||||||||||    
T  8035440 tttggttaacataatgactaaattaaaaacgtttacaaacttaaaaaacttatgtataaccaaaataacttaaa 8035513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 14166339 - 14166432
Alignment:
Q  131 acatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||| ||||||||| |||| |||| |||| | || |||| | |||||||  |||| ||||||||| | ||||||||||| ||| ||||||||||    
T  14166339 acataattgtttttgtaacatttgcttaatagaaggactaaattgaaaacgtttaaaaacttaaagggtttatgtgtgaacaagataacttaaa 14166432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 4511907 - 4511871
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataa 218  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  4511907 tttacaaacttaaaagacttatgtgtgattaaaataa 4511871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 29379958 - 29380014
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||||| || ||||||| |  ||||||||||||||||||  ||||||||||||    
T  29379958 caaacttaaaggaattatgtgaggccaaaataacttaaatgaccaatttattacaaa 29380014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 36694458 - 36694406
Alignment:
Q  173 ttgaaaatctttacaaacttaaaa-gatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||| ||||||||||||||| || |||| ||||| ||||||||||||||    
T  36694458 ttgaaaatatttacaaacttaaaaggacttatatgtgaccaaaataacttaaa 36694406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 127 - 242
Target Start/End: Complemental strand, 7209979 - 7209864
Alignment:
Q  127 tgtcacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatg 226  Q
    ||||||||||| |||||| ||| |||||||||||||||  ||| | |||||||  |||||||||||||| || |||||||||| ||||||||||||||||    
T  7209979 tgtcacatcatcgtttttgtaatgtttggttaacataagaactaaattgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaatg 7209880  T
Q  227 acttatttattacaaa 242  Q
    || |||||||||||||    
T  7209879 acgtatttattacaaa 7209864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 35188088 - 35187994
Alignment:
Q  130 cacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||| |||||||||||||||| |||||||||| | | | || ||||| |||||||||||||| ||||||||||||| ||||||||||||||    
T  35188088 cacatcatcgtttttataacgtttgattaacataaacagtaaattaaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataacttaaa 35187994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 1996330 - 1996218
Alignment:
Q  130 cacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgact 229  Q
    ||||||||||||||| ||| ||||||||| || ||||||| | |||||||  |||||||||||| | || |||||||||| |||||||||||||| ||||    
T  1996330 cacatcattgtttttgtaatgtttggttatcaaaaagactaaattgaaaacgtttacaaacttataggacttatgtgtgaccaaaataacttaaaggact 1996231  T
Q  230 tatttattacaaa 242  Q
     || |||||||||    
T  1996230 aatctattacaaa 1996218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 5746263 - 5746368
Alignment:
Q  137 ttgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttat 236  Q
    |||||||| |||||||||||||||| ||||||| | || ||||  |||||||||||||| || |||||| ||| |||||||| ||||| || | |||| |    
T  5746263 ttgtttttgtaacgtttggttaacagaaagactaaattaaaaacgtttacaaacttaaatgacttatgtatgaccaaaataatttaaaagattaatttgt 5746362  T
Q  237 tacaaa 242  Q
    ||||||    
T  5746363 tacaaa 5746368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 20927988 - 20927921
Alignment:
Q  175 gaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||| ||||||||||||||||| |||  ||||| ||||||||||||||||||  ||||||||||||    
T  20927988 gaaaatgtttacaaacttaaaagacttacttgtgaccaaaataacttaaatgaccaatttattacaaa 20927921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 16327265 - 16327192
Alignment:
Q  151 tttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||||||||| |||| | |||||||  |||||||||||||| || |||||||| | ||||||||||||||    
T  16327265 tttggttaacataaggactaaattgaaaacgtttacaaacttaaaggacttatgtgttaccaaaataacttaaa 16327192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 33491657 - 33491588
Alignment:
Q  173 ttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||| |||||||| ||||| || |||| |||||||||||||||||||| |||| ||| ||||||||    
T  33491657 ttgaaaatttttacaaagttaaaggacttatctgtgatcaaaataacttaaaggactaattgattacaaa 33491588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 7210133 - 7210200
Alignment:
Q  69 ttgcaaggatgaatgcccttggattgttttatgttctaagatacctaatcaggatgcatgtcacatca 136  Q
    ||||||||||||||  ||||| ||||||||||||||||||||  || || ||||| ||||||||||||    
T  7210133 ttgcaaggatgaatttccttgcattgttttatgttctaagatgtctgatgaggatacatgtcacatca 7210200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 35812065 - 35812156
Alignment:
Q  130 cacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataactt 221  Q
    ||||||||||||||| ||| |||||||||| | || |||| |  | ||||| |||| ||| ||||| ||||||||||||| |||||||||||    
T  35812065 cacatcattgtttttgtaaagtttggttaatagaatgactaaaataaaaatatttataaatttaaatgatttatgtgtgaccaaaataactt 35812156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 36760767 - 36760842
Alignment:
Q  150 gtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaat 225  Q
    |||||||||| | || |||| | |||||||| |||||||||| |||||| |||||||||| | |||||||||||||    
T  36760767 gtttggttaatagaaggactaaattgaaaatgtttacaaactaaaaagacttatgtgtgaccgaaataacttaaat 36760842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 4943069 - 4943143
Alignment:
Q  151 tttggttaacataaagactcatttgaaaatctttacaaacttaaaag-atttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||| | || |||| | |||||||| |||||||||||||||| | |||||||||| ||||||||||||||    
T  4943069 tttggttaatagaatgactaaattgaaaatgtttacaaacttaaaagaacttatgtgtgaccaaaataacttaaa 4943143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 17400812 - 17400854
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatgac 228  Q
    |||||||||| || |||||||||||||||||||||||||||||    
T  17400812 caaacttaaaggacttatgtgtgatcaaaataacttaaatgac 17400854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 23662013 - 23661971
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  23662013 tttacaaacttaaaagacttatgtgtgaccaaaataacttaaa 23661971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 23796557 - 23796599
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  23796557 tttacaaacttaaaagacttatgtgtgaccaaaataacttaaa 23796599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 36759781 - 36759679
Alignment:
Q  140 tttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattac 239  Q
    ||||| ||| ||||||||||||||| |||| | |||||||  |||||||||||||| || ||||  |||| |||||||| |||||  |||||| | ||||    
T  36759781 tttttgtaatgtttggttaacataatgactaaattgaaaacatttacaaacttaaaggacttataagtgaccaaaataatttaaagaacttatctgttac 36759682  T
Q  240 aaa 242  Q
    |||    
T  36759681 aaa 36759679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 7210211 - 7210308
Alignment:
Q  127 tgtcacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||||||| ||||| ||||||||  |||||| || |||| | || ||||  |||||||||||||| || |||||||  | ||||||||||||||    
T  7210211 tgtcacatcattatttttgtaacgtttaattaacagaatgactaaatttaaaacgtttacaaacttaaatgacttatgtgcaaccaaaataacttaaa 7210308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 36760627 - 36760734
Alignment:
Q  29 tgaggttcgtaaagaatgacaatgagagagttagagtttgttgcaaggatgaatgcccttggattgttttatgttctaagatacctaatcaggatgcatg 128  Q
    |||||||| |||| ||||| |||||||| || | |||| |||| |||||||| || |||| |||||||||||||| |||||| | | |  ||||||||||    
T  36760627 tgaggttcataaaaaatgataatgagagggtcaaagttggttgtaaggatga-tgtcctttgattgttttatgttataagatgcgtgacgaggatgcatg 36760725  T
Q  129 tcacatcat 137  Q
     ||||||||    
T  36760726 ccacatcat 36760734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 28559380 - 28559329
Alignment:
Q  173 ttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||  |||||||||||||| || |||||||||| ||||||||||||||    
T  28559380 ttgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaa 28559329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 35461604 - 35461530
Alignment:
Q  150 gtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||||| |||| |||| | | |||||  |||||||||||||| || |||| |||||||||||||| |||||    
T  35461604 gtttggttaatataaggactaaatcgaaaacttttacaaacttaaaggacttatttgtgatcaaaataatttaaa 35461530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 38680702 - 38680664
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  38680702 caaaattaaaagatttatgtgtgaccaaaataacttaaa 38680664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 38682799 - 38682845
Alignment:
Q  175 gaaaatctttacaaacttaaaagatttatgtgtgatcaaaataactt 221  Q
    |||||| ||||||||||||||||| |||||||| | |||||||||||    
T  38682799 gaaaatgtttacaaacttaaaagacttatgtgtaaccaaaataactt 38682845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 25456347 - 25456310
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaa 223  Q
    |||||||||| || ||||||||||||||||||||||||    
T  25456347 caaacttaaaggacttatgtgtgatcaaaataacttaa 25456310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 35461637 - 35461682
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaatga 227  Q
    ||||||||||||||||| |||| |||||  ||||||||||||||||    
T  35461637 tttacaaacttaaaagagttatttgtgacaaaaataacttaaatga 35461682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 37642930 - 37642885
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaatga 227  Q
    |||||||||||||| ||||||| || || |||||||||||||||||    
T  37642930 tttacaaacttaaaggatttatttgagaccaaaataacttaaatga 37642885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 40980783 - 40980742
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatga 227  Q
    ||||||||||  | ||||||||||||||||||||||||||||    
T  40980783 caaacttaaagtacttatgtgtgatcaaaataacttaaatga 40980742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 4943040 - 4942992
Alignment:
Q  176 aaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||| |||||||||||||| || |||||| |||||||||||| |||||    
T  4943040 aaaatgtttacaaacttaaaggacttatgtatgatcaaaataatttaaa 4942992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 10827179 - 10827143
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataactta 222  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  10827179 caaacttaaaagacttatgtgtgaccaaaataactta 10827143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 12774319 - 12774394
Alignment:
Q  151 tttggttaacataaagactcatttgaaaatctttacaaacttaaaag--atttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||||| || |||| | |||||||  ||||||||||||||||   |||||| |||| ||||||||||||||    
T  12774319 tttggttaacagaatgactaaattgaaaacgtttacaaacttaaaaggactttatgcgtgaccaaaataacttaaa 12774394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 35813476 - 35813380
Alignment:
Q  130 cacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatg 226  Q
    |||||||| |||||| ||   ||||||||| | |||||||   |||||||  |||||||||||||| || ||||||||||  ||||||||| |||||    
T  35813476 cacatcatcgtttttgtagaatttggttaataaaaagactatattgaaaacgtttacaaacttaaaggacttatgtgtgactaaaataactaaaatg 35813380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 38680770 - 38680714
Alignment:
Q  173 ttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgact 229  Q
    |||||||| |||||||| ||||| ||||| ||| | | |||||||||||||||||||    
T  38680770 ttgaaaatgtttacaaatttaaaggatttttgtataaccaaaataacttaaatgact 38680714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 41007299 - 41007205
Alignment:
Q  29 tgaggttcgtaaagaatgacaatgagagagttagagtttgttgcaaggatgaatgcccttggattgttttatgttctaagatacctaatcaggat 123  Q
    |||||||| |||||||||||||||| ||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||    
T  41007299 tgaggttcataaagaatgacaatgaaagagtcatagttggttgcaaggatggatgcccttggattgttttatgttctaagatatctaatgaggat 41007205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 52913300 - 52913411
Alignment:
Q  130 cacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgact 229  Q
    |||||||| |||||| ||| |||||||||||| || |||| | | |||||  |||||||||||||| || ||||||||||||||||||||| |||  |||    
T  52913300 cacatcatcgtttttgtaatgtttggttaacagaaggactaaatagaaaacgtttacaaacttaaaggacttatgtgtgatcaaaataactcaaagaact 52913399  T
Q  230 tatttattacaa 241  Q
     |||||||||||    
T  52913400 aatttattacaa 52913411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 2633306 - 2633399
Alignment:
Q  131 acatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||| |||||| ||| ||||||||||||||| |||| | || ||||| |||||||| ||||| || ||||| ||||  |||||||||||||    
T  2633306 acatcatcgtttttgtaatgtttggttaacataatgactaaattaaaaatgtttacaaatttaaaggacttatgcgtgacaaaaataacttaaa 2633399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 2633288 - 2633236
Alignment:
Q  175 gaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatga 227  Q
    |||||| |||||||||||||| ||||||||||| | |||||||||||||||||    
T  2633288 gaaaatgtttacaaacttaaatgatttatgtgtaaccaaaataacttaaatga 2633236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 26879666 - 26879708
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatgac 228  Q
    ||||||||||||| ||||||||||| |||||||||||||||||    
T  26879666 caaacttaaaagacttatgtgtgataaaaataacttaaatgac 26879708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 7490031 - 7489990
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatga 227  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  7490031 caaacttaaaggatttatgtgtgaccaaaataacttaaatga 7489990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 18981133 - 18981081
Alignment:
Q  175 gaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatga 227  Q
    |||||| |||||||||||||| || |||||||||| |||||||||||| ||||    
T  18981133 gaaaatgtttacaaacttaaaggacttatgtgtgaccaaaataacttatatga 18981081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 33650567 - 33650493
Alignment:
Q  150 gtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||||||||||||||| | ||||||   ||  |||||||||| || ||| |||||| ||||||||||||||    
T  33650567 gtttggttaacataaagactaaattgaaacgtttaccaaacttaaaggacttacgtgtgaccaaaataacttaaa 33650493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 1173153 - 1173105
Alignment:
Q  175 gaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||| |||||||||||||| || |||||||||| ||||||||||||||    
T  1173153 gaaaatgtttacaaacttaaa-gacttatgtgtgaccaaaataacttaaa 1173105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 26879571 - 26879644
Alignment:
Q  151 tttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||||||||| |||| | |||||||  |||| ||| ||||| ||  ||| ||||||||||||||||||||    
T  26879571 tttggttaacataatgactaaattgaaaacgtttaaaaatttaaaggacatatatgtgatcaaaataacttaaa 26879644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 52913104 - 52913047
Alignment:
Q  186 caaacttaaaag-atttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||||||| |||||||||||| |||||||||||||| |||| || | |||||||    
T  52913104 caaacttaaaaggatttatgtgtgaccaaaataacttaaaggactaatctgttacaaa 52913047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 38699036 - 38698944
Alignment:
Q  131 acatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaa 223  Q
    ||||||| |||||| |||  |||||||||||  | |||| | |||||||  |||||||| |||||||| |  ||||||| |||||||||||||    
T  38699036 acatcatcgtttttgtaatatttggttaacaacatgactaaattgaaaacgtttacaaatttaaaagactcgtgtgtgaccaaaataacttaa 38698944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 41007432 - 41007516
Alignment:
Q  140 tttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||| ||| ||||| |||||| || |||| | |||||||  ||||||||||||||||| |||| ||||| |||| ||| |||||    
T  41007432 tttttgtaatgtttgattaacagaatgactaaattgaaaacgtttacaaacttaaaagacttatatgtgaccaaattaatttaaa 41007516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 47891266 - 47891363
Alignment:
Q  127 tgtcacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||||| |||||| ||||||||||||||||||| |||| | |||||||  ||||||||||||||||| |||||||||| ||||||||||||||    
T  47891266 tgtcacatcatcgtttttgtaacgtttggttaacataaggactaaattgaaaacgtttacaaacttaaaagacttatgtgtgaccaaaataacttaaa 47891363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 28814027 - 28813913
Alignment:
Q  128 gtcacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatga 227  Q
    |||||| ||| |||||| |||||||||||||||||||| ||| | |||||||  ||||||||||| || || |||||||||| |||||||||||||||||    
T  28814027 gtcacaccatcgtttttgtaacgtttggttaacataaatactaaattgaaaacgtttacaaacttgaaggacttatgtgtgaccaaaataacttaaatga 28813928  T
Q  228 cttatttattacaaa 242  Q
       ||||||||||||    
T  28813927 tcaatttattacaaa 28813913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 43650127 - 43650074
Alignment:
Q  175 gaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgac 228  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43650127 gaaaatgtttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgac 43650074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 27768495 - 27768397
Alignment:
Q  129 tcacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatga 227  Q
    |||||||||  ||||| |||||||||||||||| |  |||| | || ||||  |||||||||||||| ||||||||||||||||||||||| |||||||    
T  27768495 tcacatcatcatttttgtaacgtttggttaacagattgactaaatttaaaacgtttacaaacttaaaggatttatgtgtgatcaaaataacataaatga 27768397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 36900031 - 36900117
Alignment:
Q  138 tgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||| ||| |||||||||||| || |||| | |||||||| |||||||||||||| |||||||||| ||| |||||||||||||    
T  36900031 tgtttttgtaatgtttggttaacagaatgactaaattgaaaatgtttacaaacttaaaggatttatgtgagattaaaataacttaaa 36900117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 54343448 - 54343515
Alignment:
Q  175 gaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||| | ||||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||    
T  54343448 gaaaatatctacaaacttaaaagatttatgtgtgatcaaaataacacaaatgaccaatttattacaaa 54343515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 32186622 - 32186716
Alignment:
Q  130 cacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||  ||||| | |||||||||||||| ||||||| | |||||||  ||||||||||||||  |||||||||| | ||||||||||||||    
T  32186622 cacatcatcatttttgttacgtttggttaacaaaaagactaaattgaaaacgtttacaaacttaaagaatttatgtgtaaccaaaataacttaaa 32186716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 14964974 - 14964919
Alignment:
Q  173 ttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgac 228  Q
    ||||||| ||||||||||||||| || |||||||||| ||||||||||||||||||    
T  14964974 ttgaaaacctttacaaacttaaaggacttatgtgtgaccaaaataacttaaatgac 14964919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 18019992 - 18020065
Alignment:
Q  151 tttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||||||||| |||| | |||||||  ||| ||||||||||||| |||||||| | ||||||||||||||    
T  18019992 tttggttaacataaggactaaattgaaaaggtttgcaaacttaaaagacttatgtgtaaccaaaataacttaaa 18020065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 26976497 - 26976558
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaag 243  Q
    |||||||||||||| || |||||||||| |||||||||||||| ||||||| | ||||||||    
T  26976497 tttacaaacttaaatgacttatgtgtgaccaaaataacttaaaggacttatatgttacaaag 26976558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 25848423 - 25848363
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||||||||||||||| ||||||| |||||||||||||  |||| || |||||||||    
T  25848423 tttacaaacttaaaagatttttgtgtgaccaaaataacttaacggactaatctattacaaa 25848363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 25848457 - 25848541
Alignment:
Q  140 tttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||| ||| |||||||||||| || |||| | |||||||  |||||||||||||| ||  ||||||||| ||||||||||||||    
T  25848457 tttttgtaatgtttggttaacagaaggactaaattgaaaacatttacaaacttaaaggacatatgtgtgaccaaaataacttaaa 25848541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 43650144 - 43650255
Alignment:
Q  130 cacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaa-cttaaaagatttatgtgtgatcaaaataacttaaatgac 228  Q
    |||||||| |||||| ||| |||| ||||||| || |||| | |||||||  |||||||| |||||| || |||||||| | |||||||||||||| |||    
T  43650144 cacatcatcgtttttgtaatgttttgttaacagaaggactaagttgaaaagatttacaaatcttaaaggacttatgtgttaccaaaataacttaaaggac 43650243  T
Q  229 ttatttattaca 240  Q
    | || |||||||    
T  43650244 tcatctattaca 43650255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 5442647 - 5442549
Alignment:
Q  127 tgtcacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaa-cttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||||| |||||| ||| ||| |||||||||||  ||| | |||||||  ||||||||  |||||||| |||| ||||| ||||||||||||||    
T  5442647 tgtcacatcatcgtttttgtaatgttgggttaacataagaactaaattgaaaacatttacaaattttaaaagacttatctgtgaccaaaataacttaaa 5442549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 27768375 - 27768337
Alignment:
Q  189 acttaaaagatttatgtgtgatcaaaataacttaaatga 227  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  27768375 acttaaaagatttatgtgtaatcaaaataacttaaatga 27768337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 36667281 - 36667323
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  36667281 tttacaaacttaaaagacttatgtgtgaccaaaataacttaaa 36667323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 46337645 - 46337596
Alignment:
Q  175 gaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||| |||||||||||||| ||||||| ||||| ||||||||||||||    
T  46337645 gaaaatttttacaaacttaaaggatttatctgtgaccaaaataacttaaa 46337596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 50332600 - 50332527
Alignment:
Q  151 tttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||| |||||  ||| | |||||||  |||||||||||||| || |||| ||||||||||||||||||||    
T  50332600 tttggttagcataagcactaaattgaaaacgtttacaaacttaaatgacttatatgtgatcaaaataacttaaa 50332527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 40286310 - 40286254
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||||| || |||||||||||||||||||||| || |||| |||| |||||||    
T  40286310 caaacttaaaggacttatgtgtgatcaaaataacttgaaggactaatttgttacaaa 40286254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 43650056 - 43650000
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||||| |||||||||||||  ||||||||||||| |||  ||||||||||||    
T  43650056 caaacttaaaggatttatgtgtgacgaaaataacttaaaagaccaatttattacaaa 43650000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 14624239 - 14624290
Alignment:
Q  173 ttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||  ||||||||||||||||| |||||||||| || |||||||||||    
T  14624239 ttgaaaacgtttacaaacttaaaagacttatgtgtgaccagaataacttaaa 14624290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 27768511 - 27768578
Alignment:
Q  175 gaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||| |||||||||||||| || || ||| |||||||||||||||||| ||   ||||||||||||    
T  27768511 gaaaatgtttacaaacttaaatgacttttgtatgatcaaaataacttaaaagagcaatttattacaaa 27768578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 3378993 - 3379074
Alignment:
Q  29 tgaggttcgtaaagaatgacaatgagagagttagagtttgttgcaaggatgaatgcccttggattgttttatgttctaagat 110  Q
    |||||||| ||||| |||| ||  |||| ||||||||| |||| |||||   ||| |||||||||| |||||||||||||||    
T  3378993 tgaggttcataaaggatgataaaaagagggttagagttggttgtaaggacagatgaccttggattgctttatgttctaagat 3379074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 26724155 - 26724086
Alignment:
Q  173 ttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||  |||| ||||||||| || |||| ||||| ||||||||||||||||||| || | |||||||    
T  26724155 ttgaaaacttttataaacttaaaggacttatatgtgaccaaaataacttaaatgactaatcttttacaaa 26724086  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 39714551 - 39714620
Alignment:
Q  173 ttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||  |||||||||| ||| || |||||||| |||||||||| ||||||||   ||||||||||||    
T  39714551 ttgaaaacgtttacaaactcaaatgacttatgtgtaatcaaaataatttaaatgatcaatttattacaaa 39714620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 40286381 - 40286332
Alignment:
Q  175 gaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||| |||||||||||||| || || ||||||| ||||||||||||||    
T  40286381 gaaaatatttacaaacttaaaggacttctgtgtgaccaaaataacttaaa 40286332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 47069699 - 47069776
Alignment:
Q  151 tttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgac 228  Q
    |||||||||||||| |||| | |||||||  |||||||||||||| || |||| |||||  ||| | |||||||||||    
T  47069699 tttggttaacataatgactaaattgaaaacgtttacaaacttaaaggacttatatgtgacgaaattcacttaaatgac 47069776  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 51833353 - 51833446
Alignment:
Q  127 tgtcacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataact 220  Q
    |||||||||||  ||||| |||||||||||||||| ||  ||| | |||| ||  ||||||| |||||| || |||||| ||| ||||||||||    
T  51833353 tgtcacatcatcatttttgtaacgtttggttaacagaagaactaaattgataacatttacaatcttaaatgacttatgtatgaccaaaataact 51833446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 252182 - 252122
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||||||||| || |||| ||||| |||||||||||||| |||| || | |||||||    
T  252182 tttacaaacttaaaggacttatttgtgaccaaaataacttaaaagactgatctgttacaaa 252122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 26976496 - 26976412
Alignment:
Q  138 tgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataactta 222  Q
    ||||||| ||| |||||||||| | || | || | |||||||   ||||||||||||||||||| ||||| | ||||||||||||    
T  26976496 tgtttttgtaatgtttggttaatagaaggtctaaattgaaaacgattacaaacttaaaagatttttgtgtaaccaaaataactta 26976412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 28814063 - 28814119
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    ||||||||||  | |||||| |||||||||||||||||| |||| || |||||||||    
T  28814063 caaacttaaagaacttatgtctgatcaaaataacttaaaagactaatctattacaaa 28814119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 40286395 - 40286463
Alignment:
Q  127 tgtcacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaa 195  Q
    ||||||||||| |||||| ||| |||||||||| | ||  ||| | |||||||| ||||||||||||||    
T  40286395 tgtcacatcatcgtttttgtaatgtttggttaatagaagaactaaattgaaaatgtttacaaacttaaa 40286463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 47573767 - 47573711
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    ||||||||||||| ||||||||||| ||||||| ||||| |||| || | |||||||    
T  47573767 caaacttaaaagacttatgtgtgataaaaataatttaaaggactaatatgttacaaa 47573711  T

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Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 17232116 - 17232004
Alignment:
Q  130 cacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgact 229  Q
    |||||||| |||||| ||| |||||||||||| ||  ||| | |||||||  ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  17232116 cacatcatcgtttttgtaatgtttggttaacagaagaactaaattgaaaacgtttacaaacttaaaagacttatgtgtgatcaaaataacttaaaagact 17232017  T
Q  230 tatttattacaaa 242  Q
    ||| | |||||||    
T  17232016 tatctgttacaaa 17232004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 12592370 - 12592270
Alignment:
Q  127 tgtcacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatg 226  Q
    ||||||||||| |||||| ||| |||||||| ||| || |||| | |||||||  |||||||||||| ||||||||||||||| ||||||||||||||||    
T  12592370 tgtcacatcatcgtttttgtaatgtttggttgacagaatgactaaattgaaaacgtttacaaacttacaagatttatgtgtgaccaaaataacttaaatg 12592271  T
Q  227 a 227  Q
    |    
T  12592270 a 12592270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 127 - 242
Target Start/End: Original strand, 45787180 - 45787295
Alignment:
Q  127 tgtcacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatg 226  Q
    |||||||||||||||||| |||  ||||||||| | || |||| | |||||||  ||| ||||||||||| | |||||||||||||||||||||||||      
T  45787180 tgtcacatcattgtttttgtaatatttggttaaaagaatgactaaattgaaaacgtttgcaaacttaaaaaacttatgtgtgatcaaaataacttaaaaa 45787279  T
Q  227 acttatttattacaaa 242  Q
    ||| ||||||||||||    
T  45787280 actaatttattacaaa 45787295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 26782459 - 26782387
Alignment:
Q  151 tttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||||||||| |||| | |||||||| ||||||||||||||||| ||| |||||| ||||||||||||||    
T  26782459 tttggttaacataaggactaaattgaaaatttttacaaacttaaaagactta-gtgtgaccaaaataacttaaa 26782387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 24684193 - 24684137
Alignment:
Q  173 ttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgact 229  Q
    |||||||  |||||||||||||||||||||||||| | |||||||||||||||||||    
T  24684193 ttgaaaacgtttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgact 24684137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 2788052 - 2787979
Alignment:
Q  150 gtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||||||| ||||||| ||| |||||  |||||||||||||| || |||||||||| ||||||||||||||    
T  2788052 gtttggttaacagaaagactaatt-gaaaacatttacaaacttaaatgacttatgtgtgaccaaaataacttaaa 2787979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 17236832 - 17236790
Alignment:
Q  200 ttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  17236832 ttatgtgtgaccaaaataacttaaatgacttatttattacaaa 17236790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 40120701 - 40120779
Alignment:
Q  59 ttagagtttgttgcaaggatgaatgcccttggattgttttatgttctaagatacctaatcaggatgcatgtcacatcat 137  Q
    |||||||| |||| ||||||||||| | ||||||||||||||||||||||||  ||||| || | | ||||||||||||    
T  40120701 ttagagttggttggaaggatgaatgtctttggattgttttatgttctaagatgtctaatgagaaagtatgtcacatcat 40120779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 40395234 - 40395193
Alignment:
Q  183 ttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  40395234 ttacaaacttaaaagatttatgtgtgaccaaaataacttaaa 40395193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 51950661 - 51950564
Alignment:
Q  127 tgtcacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||||||  ||||| |||||| | ||||| | || |||| | |||||||  |||||||||||||| || |||||||||| ||||||||||||||    
T  51950661 tgtcacatcatcatttttgtaacgtctcgttaatagaaggactaaattgaaaacatttacaaacttaaaggacttatgtgtgaccaaaataacttaaa 51950564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 53863484 - 53863411
Alignment:
Q  151 tttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||||||||||||| | ||||||   |||||||||||||| || ||||||||||  |||||||||||||    
T  53863484 tttggttaacataaagactaaattgaaatcttttacaaacttaaaggacttatgtgtgactaaaataacttaaa 53863411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 242
Target Start/End: Original strand, 2470058 - 2470169
Alignment:
Q  131 acatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgactt 230  Q
    |||||||  ||||| ||||||||||||||||||| |||| | | | |||  | |||| ||| |||||| |||||||||| |||||||||||||| |||      
T  2470058 acatcatcatttttttaacgtttggttaacataaggactaaatcggaaaggtatacatactaaaaagacttatgtgtgaccaaaataacttaaaggacca 2470157  T
Q  231 atttattacaaa 242  Q
    || |||||||||    
T  2470158 atatattacaaa 2470169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 12498765 - 12498714
Alignment:
Q  173 ttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||| | |||||||||||||| ||||||||||||| ||||||||||||||    
T  12498765 ttgaaattttttacaaacttaaaggatttatgtgtgaccaaaataacttaaa 12498714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 41083190 - 41083148
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||||||||| || |||||||||||||||||||||||||    
T  41083190 tttacaaacttaaaggacttatgtgtgatcaaaataacttaaa 41083148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 41519320 - 41519231
Alignment:
Q  139 gtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgac 228  Q
    |||||| ||| |||||||||||||||||||  | |||||||  |||||||||||||| || |||| | |||  ||||||||||| |||||    
T  41519320 gtttttgtaatgtttggttaacataaagaccaaattgaaaacgtttacaaacttaaaggacttatttttgactaaaataacttagatgac 41519231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 41519347 - 41519400
Alignment:
Q  176 aaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgact 229  Q
    ||||| ||||||||||||||||| ||||||||||  ||||| ||||||||||||    
T  41519347 aaaatgtttacaaacttaaaagacttatgtgtgactaaaatgacttaaatgact 41519400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 40147142 - 40147050
Alignment:
Q  127 tgtcacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataac 219  Q
    ||||||||||| |||||| ||| ||||||||||||||| || | |  ||||||  ||||||| |||||| || | |||||||| |||||||||    
T  40147142 tgtcacatcatcgtttttgtaatgtttggttaacataaggaataaactgaaaacatttacaaccttaaaggactcatgtgtgaccaaaataac 40147050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 50290403 - 50290459
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    ||||||||||| | |||||||||| |||||||||||||||||   ||||||||||||    
T  50290403 caaacttaaaaaacttatgtgtgaccaaaataacttaaatgatcaatttattacaaa 50290459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 45038377 - 45038419
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||||||||| || |||||||||| ||||||||||||||    
T  45038377 tttacaaacttaaaggacttatgtgtgaccaaaataacttaaa 45038419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 2788160 - 2788197
Alignment:
Q  187 aaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  2788160 aaacttaaaggatttatgtgtgaccaaaataacttaaa 2788197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 12498885 - 12498926
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatga 227  Q
    |||||||||| || ||||||||||| ||||||||||||||||    
T  12498885 caaacttaaaggacttatgtgtgattaaaataacttaaatga 12498926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 26782471 - 26782536
Alignment:
Q  159 acataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||| |||| | |||||||  ||||||||||||||||| |||| |||||  |||||||||||||    
T  26782471 acataaggactaaattgaaaacttttacaaacttaaaagacttatatgtgacaaaaataacttaaa 26782536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 50290264 - 50290215
Alignment:
Q  176 aaaatctttacaaacttaaaag-atttatgtgtgatcaaaataacttaaa 224  Q
    ||||| |||| ||||||||||| |||||||||||| ||||||||||||||    
T  50290264 aaaatatttaaaaacttaaaagtatttatgtgtgaccaaaataacttaaa 50290215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 25055953 - 25055897
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||||| ||||||||||| | |||||||||||||| |||  || |||||||||    
T  25055953 caaacttaaaggatttatgtgtcaccaaaataacttaaaggacaaatctattacaaa 25055897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 40119647 - 40119579
Alignment:
Q  127 tgtcacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaa 195  Q
    ||||||||||||| |||| |||  |||||||||||||| |||| | |||||||  |||| |||||||||    
T  40119647 tgtcacatcattgattttgtaatatttggttaacataaggactaaattgaaaacgtttataaacttaaa 40119579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 46196182 - 46196126
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||||| || |||| ||||| |||||||||||||| ||| ||| |||||||||    
T  46196182 caaacttaaaggacttatttgtgaccaaaataacttaaaggacatatctattacaaa 46196126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 53863387 - 53863351
Alignment:
Q  188 aacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||| || |||||||||||||||||||||||||    
T  53863387 aacttaaatgacttatgtgtgatcaaaataacttaaa 53863351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 40951787 - 40951890
Alignment:
Q  127 tgtcacatcattgtttttataacgtttggttaa---cataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaa 223  Q
    ||||||||||| |||||| ||| ||||||||||   ||||| |||| | | |||||| |||||||||||||| ||||||||||||| |||||||||||||    
T  40951787 tgtcacatcatcgtttttgtaatgtttggttaattacataatgactaaatagaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataacttaa 40951886  T
Q  224 atga 227  Q
    ||||    
T  40951887 atga 40951890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 30869557 - 30869643
Alignment:
Q  138 tgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||| ||| |||||||||||| ||||||| | |||||||| |||||||||||||| || ||| | ||||| |||||||||||||    
T  30869557 tgtttttgtaatgtttggttaacaaaaagactaaattgaaaatgtttacaaacttaaaggacttacgcgtgataaaaataacttaaa 30869643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 29710490 - 29710563
Alignment:
Q  151 tttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||||||||| |||| | |||||||  |||||||||||||| || ||||||||||  |||||||||||||    
T  29710490 tttggttaacataaggactaaattgaaaagttttacaaacttaaatgacttatgtgtgacgaaaataacttaaa 29710563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 6069260 - 6069322
Alignment:
Q  180 tctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    ||||||||||||||||  | |||||| |||||||||||||||||||||| ||| | |||||||    
T  6069260 tctttacaaacttaaagaacttatgtttgatcaaaataacttaaatgacatatatgttacaaa 6069322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 6694698 - 6694625
Alignment:
Q  150 gtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||||||||||||||| | |||||||  ||| |||||||||| || |||||||| | ||||||||||||||    
T  6694698 gtttggttaacataaagactaaattgaaaacgtttgcaaacttaaaggacttatgtgt-aacaaaataacttaaa 6694625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 29019415 - 29019342
Alignment:
Q  151 tttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||| |||||| || |||| | |||||||  |||||||||||||| || |||||||||| ||||||||||||||    
T  29019415 tttgattaacagaatgactaaattgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaa 29019342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 4048407 - 4048459
Alignment:
Q  175 gaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatga 227  Q
    |||||| |||||||||||||| || |||||||| | |||||||||||||||||    
T  4048407 gaaaatgtttacaaacttaaaggacttatgtgtaaccaaaataacttaaatga 4048459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 22026595 - 22026487
Alignment:
Q  29 tgaggttcgtaaagaatgacaatgagagagttagagtttgttgcaaggatgaatgcccttggattgttttatgttctaagatacctaatcaggatgcatg 128  Q
    |||||||  |||||||| ||||| |||| |  ||||||| |||||| |||| ||| | |||| |||||||||||| |||||||||| || ||||| ||||    
T  22026595 tgaggttgataaagaatcacaattagagggcgagagtttattgcaaagatggatgtctttggtttgttttatgttataagataccttatgaggatacatg 22026496  T
Q  129 tcacatcat 137  Q
      |||||||    
T  22026495 caacatcat 22026487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 42312831 - 42312775
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||||| || |||||||||| ||||||||||||||||||  || |||||||||    
T  42312831 caaacttaaaggacttatgtgtgaccaaaataacttaaatgaccaatatattacaaa 42312775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 43258387 - 43258335
Alignment:
Q  175 gaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatga 227  Q
    |||||| ||||||||||||||| | ||||||||||  ||||||||||||||||    
T  43258387 gaaaatgtttacaaacttaaaacacttatgtgtgacaaaaataacttaaatga 43258335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 4048390 - 4048296
Alignment:
Q  130 cacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||  ||||| ||| |||||||||||| || |||| | |||||||  ||||||||||| || ||||||| ||||| ||  ||||||||||    
T  4048390 cacatcatcatttttgtaatgtttggttaacaaaatgactaaattgaaaacgtttacaaacttcaaggatttatatgtgaccattataacttaaa 4048296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 23164045 - 23164159
Alignment:
Q  127 tgtcacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatg 226  Q
    ||||||||||| |||||| |||| |||| ||||||  |  | | | |||||||| | ||||||||||||  | |||||||||| ||| | ||||||||||    
T  23164045 tgtcacatcatcgtttttgtaacatttgattaacaacataaataaattgaaaatgtatacaaacttaaataacttatgtgtgaacaatacaacttaaatg 23164144  T
Q  227 acttatttattacaa 241  Q
    | ||||||| |||||    
T  23164145 atttatttaatacaa 23164159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 40951766 - 40951720
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgac 228  Q
    |||||||||||||| || ||||||| || ||||||||||||||||||    
T  40951766 tttacaaacttaaatgacttatgtgcgaccaaaataacttaaatgac 40951720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 3198396 - 3198287
Alignment:
Q  133 atcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttat 232  Q
    ||||| |||||| ||| ||||||||||||  | || | | |||||||| ||||||||||| ||  | ||||||| || |||||||||||||| |||  ||    
T  3198396 atcatcgtttttgtaatgtttggttaacaggatgattaaattgaaaatgtttacaaactttaagaacttatgtgggaccaaaataacttaaaagaccaat 3198297  T
Q  233 ttattacaaa 242  Q
    || |||||||    
T  3198296 ttgttacaaa 3198287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 6068829 - 6068728
Alignment:
Q  141 ttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattaca 240  Q
    |||| ||||||| |||||||| || |||| | ||||||   |||| ||||||| |  |||||||| |||| ||||||| ||||| ||| |||||||||||    
T  6068829 ttttgtaacgttgggttaacaaaatgactaaattgaaatcgtttataaacttatagaatttatgtatgattaaaataatttaaaggacatatttattaca 6068730  T
Q  241 aa 242  Q
    ||    
T  6068729 aa 6068728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 6694604 - 6694547
Alignment:
Q  185 acaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    ||||||||||| || ||||||| || |||||||||||||| |||  ||||||||||||    
T  6694604 acaaacttaaaggacttatgtgggaacaaaataacttaaaagaccaatttattacaaa 6694547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 27280802 - 27280709
Alignment:
Q  130 cacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaa 223  Q
    |||||||| |||||| ||| |||||||||||  || |||| | | |||||  |||||||||||||| || ||| |||| | |||||||||||||    
T  27280802 cacatcatcgtttttgtaatgtttggttaactgaatgactaaatcgaaaacgtttacaaacttaaaggacttacgtgttaccaaaataacttaa 27280709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 43258405 - 43258498
Alignment:
Q  131 acatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||| |||||| |||  ||| ||||||| || |||| | || ||||  |||| ||||||||| || ||||||||||||||||||| |||||    
T  43258405 acatcatcgtttttgtaatattttgttaacagaatgactaaattaaaaacgtttaaaaacttaaaggacttatgtgtgatcaaaataatttaaa 43258498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 44293915 - 44293866
Alignment:
Q  175 gaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||| ||||||||||||||  |||||| ||||| ||||||||||||||    
T  44293915 gaaaatgtttacaaacttaaagtatttatttgtgaccaaaataacttaaa 44293866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 11975632 - 11975684
Alignment:
Q  173 ttgaaaatctttacaaacttaaaa-gatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||| ||||||||||||||| || ||||||||||  |||||||||||||    
T  11975632 ttgaaaatatttacaaacttaaaaggacttatgtgtgacaaaaataacttaaa 11975684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 22026464 - 22026408
Alignment:
Q  141 ttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaag 197  Q
    |||| ||||||||||||||||||| |||| | || ||||  ||||||||||||||||    
T  22026464 ttttgtaacgtttggttaacataaggactaaattaaaaacgtttacaaacttaaaag 22026408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 46713342 - 46713286
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||| ||||| || |||||||| || ||||||| |||||||||| ||||||||||||    
T  46713342 caaatttaaaggacttatgtgttattaaaataatttaaatgactaatttattacaaa 46713286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 21598615 - 21598689
Alignment:
Q  150 gtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||||||||| |||| | |||||||  |||||||||||||| || |||||||||| ||||||||||||||    
T  21598615 gtttggttaacataaggactaaattgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaa 21598689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 2761574 - 2761659
Alignment:
Q  153 tggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttatta 238  Q
    ||||||||| || |||| | |||||||  |||||||||||||| ||||||||||||||||||||||| |||| |||  ||||||||    
T  2761574 tggttaacagaaggactaaattgaaaacgtttacaaacttaaaggatttatgtgtgatcaaaataacctaaaagaccaatttatta 2761659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 17137011 - 17136938
Alignment:
Q  151 tttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||||| || |||| | |||||||  ||||||||||||||||| |||||||||| ||||||||||||||    
T  17137011 tttggttaacaaaaggactaaattgaaaacgtttacaaacttaaaagacttatgtgtgaccaaaataacttaaa 17136938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 3848672 - 3848564
Alignment:
Q  134 tcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatt 233  Q
    ||||||||||| |||| ||||||||||| || |||| | ||||||   |||||||||||||| |  |||| ||| | |||| ||||||||||||| ||||    
T  3848672 tcattgtttttgtaacatttggttaacaaaaggactaaattgaaaccgtttacaaacttaaaggtattatatgtaagcaaactaacttaaatgacctatt 3848573  T
Q  234 tattacaaa 242  Q
    | |||||||    
T  3848572 ttttacaaa 3848564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 2761546 - 2761495
Alignment:
Q  173 ttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||  |||||||||||||| || |||||||||||||||||||||||||    
T  2761546 ttgaaaacgtttacaaacttaaaggacttatgtgtgatcaaaataacttaaa 2761495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 3895696 - 3895747
Alignment:
Q  191 ttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||| ||||||||||||||| |||||||||||||||||| |||| |||||||    
T  3895696 ttaagagatttatgtgtgattaaaataacttaaatgactaatttgttacaaa 3895747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 364199 - 364241
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  364199 tttacaaacttaaaagacttatgtgtgaccaaaataacttaaa 364241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 35050672 - 35050625
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgact 229  Q
    |||| |||||||||||||||||||||||  ||||||||||||| ||||    
T  35050672 tttataaacttaaaagatttatgtgtgacaaaaataacttaaaggact 35050625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 364173 - 364079
Alignment:
Q  130 cacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||  ||||| |||||||||||||| | || || | | |||||||| ||||||||||||||  | |||| ||||| ||||| ||||||||    
T  364173 cacatcatcatttttgtaacgtttggttaatagaatgattaagttgaaaatgtttacaaacttaaagaacttatttgtgaccaaaacaacttaaa 364079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 5197588 - 5197669
Alignment:
Q  29 tgaggttcgtaaagaatgacaatgagagagttagagtttgttgcaaggatgaatgcccttggattgttttatgttctaagat 110  Q
    |||||||| ||||| |||| ||  |||| ||||||||| |||| |||||   ||| |||||||||| |||||||||||||||    
T  5197588 tgaggttcataaaggatgataaaaagagggttagagttggttgtaaggacagatgtccttggattgctttatgttctaagat 5197669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 10356432 - 10356505
Alignment:
Q  151 tttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||||||||| || | | |||||||  |||||||||||||| || |||||||||   |||||||||||||    
T  10356432 tttggttaacataaggattaaattgaaaagttttacaaacttaaaggacttatgtgtggcaaaaataacttaaa 10356505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 13273236 - 13273313
Alignment:
Q  151 tttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgac 228  Q
    |||||||| |||||| ||| | |||||||  || |||||||||||  | ||||||||||  |||||||||||||||||    
T  13273236 tttggttagcataaaaactaaattgaaaaagttcacaaacttaaagaacttatgtgtgacaaaaataacttaaatgac 13273313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 24059801 - 24059756
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaatga 227  Q
    |||||||||||||| || |||||||||| |||||||| ||||||||    
T  24059801 tttacaaacttaaaggacttatgtgtgaccaaaataatttaaatga 24059756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 31091349 - 31091261
Alignment:
Q  136 attgtttttataacgtttggttaacataaa-gactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||| ||| || ||||||||| ||  |||| | |||||||  |||||||| |||||| |||||||| ||||||||||||||||||    
T  31091349 attgtttttgtaatgtatggttaacaaaaccgactaaattgaaaacgtttacaaatttaaaa-atttatgtttgatcaaaataacttaaa 31091261  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 17136916 - 17136860
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||||| || ||||||| || |||||||||||||| |||| || |||||||||    
T  17136916 caaacttaaatgacttatgtgagaccaaaataacttaaaggactaatctattacaaa 17136860  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 17342575 - 17342531
Alignment:
Q  183 ttacaaacttaaaagatttatgtgtgatcaaaataacttaaatga 227  Q
    ||||||||||||| || |||||||||| | |||||||||||||||    
T  17342575 ttacaaacttaaaggacttatgtgtgaccgaaataacttaaatga 17342531  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 242
Target Start/End: Original strand, 35225558 - 35225670
Alignment:
Q  130 cacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgact 229  Q
    ||||||||  ||||| ||| |||| ||||||| || |||| | ||||| |  |||||||||||| | || ||||||||||  ||||||||| ||||||      
T  35225558 cacatcatcatttttgtaatgtttagttaacaaaaggactaaattgaatacgtttacaaacttataggaattatgtgtgacaaaaataactcaaatgatc 35225657  T
Q  230 tatttattacaaa 242  Q
     ||||||||||||    
T  35225658 aatttattacaaa 35225670  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 24793151 - 24793055
Alignment:
Q  128 gtcacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||| ||||||||| ||| ||||||||||||||| || | | |||||||| |||||||| |||||  | |||||||| | |||||||| |||||    
T  24793151 gtcacataattgtttttttaatgtttggttaacataatgattaaattgaaaatttttacaaatttaaagtacttatgtgtaaccaaaataatttaaa 24793055  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 9399985 - 9400070
Alignment:
Q  140 tttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaa-gatttatgtgtgatcaaaataacttaaa 224  Q
    ||||| ||| |||||||||||  || |||| | |||||||  ||||||||||||||| || |||||||||| ||||||||||||||    
T  9399985 tttttgtaatgtttggttaacggaatgactaaattgaaaaggtttacaaacttaaaaggacttatgtgtgaccaaaataacttaaa 9400070  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 28618829 - 28618898
Alignment:
Q  173 ttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||  ||||||||||||||| |||||| ||||| |||||||||||||| |||   |||||||||||    
T  28618829 ttgaaaacgtttacaaacttaaaaaatttatttgtgaccaaaataacttaaaggaccattttattacaaa 28618898  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 36052993 - 36053090
Alignment:
Q  127 tgtcacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||||||  ||||| ||| |||||||||||| || ||||   |||||||  ||||||||||||||  | ||||||||||  |||||||||||||    
T  36052993 tgtcacatcatcatttttgtaatgtttggttaacagaatgactagattgaaaacttttacaaacttaaagaacttatgtgtgactaaaataacttaaa 36053090  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 41151572 - 41151499
Alignment:
Q  151 tttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||||||||| || |||| | |||||||  ||||||||| |||| || |||||||||| ||||||||||||||    
T  41151572 tttggttaacagaaggactaaattgaaaacatttacaaacataaaggacttatgtgtgaccaaaataacttaaa 41151499  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 24827493 - 24827433
Alignment:
Q  182 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||| |||||||| ||||||||||  |||||||||||||||||  || |||||||||    
T  24827493 tttacaaatttaaaagacttatgtgtgactaaaataacttaaatgacaaatctattacaaa 24827433  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 24909669 - 24909725
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||||| || ||||||||||||||||||||||||| |||  |||| |||||||    
T  24909669 caaacttaaaggacttatgtgtgatcaaaataacttaaaggaccaatttgttacaaa 24909725  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 24083296 - 24083335
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaat 225  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  24083296 caaacttaaaagccttatgtgtgatcaaaataacttaaat 24083335  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 27128019 - 27127968
Alignment:
Q  173 ttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||  |||||||||||||| || |||||||||| ||||||||||||||    
T  27128019 ttgaaaacatttacaaacttaaaggacttatgtgtgaccaaaataacttaaa 27127968  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 27855627 - 27855573
Alignment:
Q  188 aacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    |||||||| |||||||||||| ||||||||||||||| |||  || |||||||||    
T  27855627 aacttaaatgatttatgtgtgttcaaaataacttaaaggaccaatctattacaaa 27855573  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 41151477 - 41151439
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||||||| || |||||||||||||||||||||||||    
T  41151477 caaacttaaaggacttatgtgtgatcaaaataacttaaa 41151439  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 20209403 - 20209354
Alignment:
Q  175 gaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||| ||||||||||||||  |||||| ||||| ||||||||||||||    
T  20209403 gaaaatgtttacaaacttaaagtatttatttgtgaccaaaataacttaaa 20209354  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 20229111 - 20229062
Alignment:
Q  175 gaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||| ||||||||||||||  |||||| ||||| ||||||||||||||    
T  20229111 gaaaatgtttacaaacttaaagtatttatttgtgaccaaaataacttaaa 20229062  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 22813181 - 22813144
Alignment:
Q  185 acaaacttaaaagatttatgtgtgatcaaaataactta 222  Q
    ||||||||||| || |||||||||||||||||||||||    
T  22813181 acaaacttaaatgacttatgtgtgatcaaaataactta 22813144  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 22813460 - 22813525
Alignment:
Q  130 cacatcattgtttttataacgtttggttaacataaagactcatttgaaaatctttacaaacttaaa 195  Q
    |||||||| |||||| ||| ||||||||||| |||| ||| | |||||||  ||||||||||||||    
T  22813460 cacatcatcgtttttgtaatgtttggttaacctaaaaactaaattgaaaacgtttacaaacttaaa 22813525  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 38414665 - 38414625
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatga 227  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  38414665 caaacttaaaa-atttatgtgtgatcaaaataaattaaatga 38414625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 9399973 - 9399910
Alignment:
Q  160 cataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||| |||| | |||||||| ||||||| |||||||| || |||||||| ||||||||||||||    
T  9399973 cataatgactaaattgaaaatgtttacaatcttaaaagctt-atgtgtgaccaaaataacttaaa 9399910  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 14550276 - 14550324
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatgacttattt 234  Q
    ||||||||||||| |||||| ||| |||||||||||||| |||| ||||    
T  14550276 caaacttaaaagacttatgtatgaccaaaataacttaaaggactaattt 14550324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 16913073 - 16913017
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatgacttatttattacaaa 242  Q
    ||||||||||  |||||| |||||||||||||||||||| |||   |||||||||||    
T  16913073 caaacttaaagaatttatatgtgatcaaaataacttaaaagaccattttattacaaa 16913017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 21712 - 21763
Alignment:
Q  173 ttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    |||||| | |||||||||||||| ||||||||||||| ||||||||||||||    
T  21712 ttgaaattttttacaaacttaaaggatttatgtgtgaccaaaataacttaaa 21763  T

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Target: scaffold0157; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 21592 - 21551
Alignment:
Q  186 caaacttaaaagatttatgtgtgatcaaaataacttaaatga 227  Q
    |||||||||| || ||||||||||| ||||||||||||||||    
T  21592 caaacttaaaggacttatgtgtgattaaaataacttaaatga 21551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 161575 - 161648
Alignment:
Q  151 tttggttaacataaagactcatttgaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 224  Q
    ||||| ||||| || |||| | |||||||  |||||||||||||| || |||||||||| ||||||||| ||||    
T  161575 tttggctaacagaatgactaaattgaaaacttttacaaacttaaaggacttatgtgtgaccaaaataacctaaa 161648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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