View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19996_high_22 (Length: 259)
Name: NF19996_high_22
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19996_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 389261 - 389016
Alignment:
| Q |
1 |
gtcaacaagggatttcttaacttatccacttttcaatttcttccatactattaaataatatttgtttagcttggagcttagtcttattaatcatatgcaa |
100 |
Q |
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| T |
389261 |
gtcaacaagggatttcttaacttatccacttttcaatttcttccatactattaaataatatttgtttagcttggagcttagtcttattaatcatatgcaa |
389162 |
T |
|
| Q |
101 |
atgtttcaaaatggttataatcattagttaattaaatcttgttgaataaagttgaccctttatatattgctttgtatggaagcttactttctatttcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
389161 |
atgtttcaaaatggttataatcattagttaattaaatcttgttgaataaagttgaccctttatatattgctttgtatggaagcttagtttctatttcttt |
389062 |
T |
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| Q |
201 |
tctctgtgcctccaaagaaagaa----agaactaaccacaacatgt |
242 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
389061 |
tctctgtgcctccaaagaaagaaagaaagaactaaccacaacatgt |
389016 |
T |
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