View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19996_high_23 (Length: 254)
Name: NF19996_high_23
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19996_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 34018947 - 34019191
Alignment:
| Q |
1 |
ctccactgtaactagatccctttgttcatcaaactgcatgacagaatgccaaagaccaaacttatttactattaattaattgctcaccacgaaaatattg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34018947 |
ctccactgtaactagatccctttgttcatcaaactgcatgacagaatgccaaagaccaaacttatgtactattaattaattgctcaccacgaaaatattg |
34019046 |
T |
|
| Q |
101 |
tcaatagcatgaataaataaaacaagcgataatcaacacagcaaaagctgataaaaccctaaaacatcctgtcgcaattatttatggaccaacaa---tt |
197 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34019047 |
tcaatagcatgaataaataaaacaagcaataatcaacacagcaaaagctgataaaaccctaaaacatcctgtcgcaattatttatggaccaacaattctt |
34019146 |
T |
|
| Q |
198 |
atacagaatttcgagttctgttttcctagcctatattcacaggtt |
242 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34019147 |
atacagaatttcgagttctgttttcctagcctatattcacaggtt |
34019191 |
T |
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