View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19996_high_24 (Length: 254)
Name: NF19996_high_24
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19996_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 38836404 - 38836629
Alignment:
| Q |
9 |
gaaaaatattacaacttttattacttttatcaataaaaacatacacttttacctcnnnnnnngaaa-tactctttaatgtcttacagtaattgtcacatt |
107 |
Q |
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| T |
38836404 |
gaaaaaaattacaacttttattacttttatcaataaaaacatacacttttacctcaaaaaaaaaaaatacactttaatgttttacaataattgtcacatt |
38836503 |
T |
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| Q |
108 |
tgcaaaaattatttgcgctaaaacattttttagcatgctacatggaagaaacatcacaatttttatggatgttaggtagttcttcgcatacatct--cca |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38836504 |
tgcaaaaattatttgcgctaaaacattttttagcatgctacatggaagaaacatcacaatttttatggatgttaggtagttcttcgcatacatctcccca |
38836603 |
T |
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| Q |
206 |
ttcacttctttaacagtagtatgtat |
231 |
Q |
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|||||||||||||||||||||||||| |
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| T |
38836604 |
ttcacttctttaacagtagtatgtat |
38836629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 38833565 - 38833685
Alignment:
| Q |
10 |
aaaaatattacaacttttattacttttatcaataaaaacatacacttttacctcnnnnnnngaaatactctttaatgtcttacagtaattgtcacatttg |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||| ||||| ||||||||| ||||| |
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| T |
38833565 |
aaaaaaattacaacttttattacttttatcaataaaaacatacacttttacctcaaaaaaaaaaatacactgaaatgttttacaataattgtcagatttg |
38833664 |
T |
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| Q |
110 |
caaaaattatttgcgctaaaa |
130 |
Q |
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||||||||||||||||||||| |
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| T |
38833665 |
caaaaattatttgcgctaaaa |
38833685 |
T |
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