View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19996_high_27 (Length: 242)
Name: NF19996_high_27
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19996_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-128; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 54791084 - 54790846
Alignment:
| Q |
1 |
tactccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgagtgtgccgtttaagttcttcact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791084 |
tactccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgagtgtgccgtttaagttcttcact |
54790985 |
T |
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| Q |
101 |
ttgtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatctgactcttcttcagagctgtagtccattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54790984 |
ttgtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatctgactcttcttcagagctgtagtccattg |
54790885 |
T |
|
| Q |
201 |
aagctctgcatacaattacaaatgtcagttcataagtat |
239 |
Q |
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|||||||||||||| |||| ||||||||||||||||||| |
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| T |
54790884 |
aagctctgcatacagttacgaatgtcagttcataagtat |
54790846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 54778061 - 54778299
Alignment:
| Q |
1 |
tactccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgagtgtgccgtttaagttcttcact |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54778061 |
tactccggtttcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgagtgtgccgtttaagttcttcact |
54778160 |
T |
|
| Q |
101 |
ttgtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatctgactcttcttcagagctgtagtccattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54778161 |
ttgtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatctgactcttcttcagagctgtagtccattg |
54778260 |
T |
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| Q |
201 |
aagctctgcatacaattacaaatgtcagttcataagtat |
239 |
Q |
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|||||||||||||| |||| ||||||||||||||||||| |
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| T |
54778261 |
aagctctgcatacagttacgaatgtcagttcataagtat |
54778299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 52283742 - 52283504
Alignment:
| Q |
1 |
tactccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgagtgtgccgtttaagttcttcact |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| |
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| T |
52283742 |
tactccagttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatggacacctgagtgtaccgtttaaattcttcact |
52283643 |
T |
|
| Q |
101 |
ttgtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatctgactcttcttcagagctgtagtccattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52283642 |
ttgtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcgctgatatctgactcttcttcagagctgtagtccattg |
52283543 |
T |
|
| Q |
201 |
aagctctgcatacaattacaaatgtcagttcataagtat |
239 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |
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| T |
52283542 |
aagctctgcatacaattacaaatgtcagttcgtaagtat |
52283504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 799018 - 798789
Alignment:
| Q |
1 |
tactccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgagtgtgccgtttaagttcttcact |
100 |
Q |
| |
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|||||| | ||||||||||| || ||||||||| ||||| |||||||| || ||||||| ||||| |||||||| || || || || |||||| ||| |
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| T |
799018 |
tactccagatgcatgttgcaacagatccttatacttgaattcttgctttttctttccagagcaatacgggcacctaagagtcccattgttgttcttgact |
798919 |
T |
|
| Q |
101 |
ttgtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatctgactcttcttcagagctgtagtccattg |
200 |
Q |
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||||||||||| || ||||||| | ||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
798918 |
ttgtatttaccggcccttaactcttcatatggtttctcagagtattcctcgatctcagactcactgatctctgactcttcttcagagctgtagtccattg |
798819 |
T |
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| Q |
201 |
aagctctgcatacaattacaaatgtcagtt |
230 |
Q |
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|| |||||| || ||| |||||||||||| |
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| T |
798818 |
aaactctgcgtaagatttcaaatgtcagtt |
798789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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